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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC25A2
ENSSSCG00000027249
ENSG00000120329
Solute carrier family 25 member 2
Low tissue specificity
Detected in many
SLC25A20
ENSSSCG00000011366
ENSG00000178537
Solute carrier family 25 member 20
Low tissue specificity
Detected in all
SLC25A21
ENSSSCG00000039317
ENSG00000183032
Solute carrier family 25 member 21
Tissue enhanced
Detected in many
liver:
17.3
thyroid gland:
29.1
SLC25A22
ENSSSCG00000012844
ENSG00000177542
Solute carrier family 25 member 22
Tissue enhanced
Detected in all
brain:
43.3
SLC25A23
ENSSSCG00000013550
ENSG00000125648
Calcium-binding mitochondrial carrier protein SCaMC-3
Tissue enhanced
Detected in all
brain:
43.6
smooth muscle:
39.6
SLC25A24
ENSSSCG00000006848
ENSG00000085491
Calcium-binding mitochondrial carrier protein SCaMC-1
Tissue enhanced
Detected in all
large intestine:
51.3
SLC25A25
ENSSSCG00000005636
ENSG00000148339
Calcium-binding mitochondrial carrier protein SCaMC-2
Low tissue specificity
Detected in all
SLC25A26
ENSSSCG00000011498
ENSG00000144741
Solute carrier family 25 member 26
Tissue enhanced
Detected in all
male glands:
38.8
SLC25A27
ENSSSCG00000001720
ENSG00000153291
Mitochondrial uncoupling protein 4
Tissue enhanced
Detected in all
liver:
80.5
SLC25A28
ENSSSCG00000037536
ENSG00000155287
Solute carrier family 25 member 28
Low tissue specificity
Detected in all
SLC25A29
ENSSSCG00000002520
ENSG00000197119
Solute carrier family 25 member 29
Low tissue specificity
Detected in all
SLC25A3
ENSSSCG00000000886
ENSG00000075415
Phosphate carrier protein, mitochondrial
Low tissue specificity
Detected in all
SLC25A32
ENSSSCG00000006049
ENSG00000164933
Solute carrier family 25 member 32
Low tissue specificity
Detected in all
SLC25A33
ENSSSCG00000038006
ENSG00000171612
Solute carrier family 25 member 33
Low tissue specificity
Detected in all
SLC25A34
ENSSSCG00000032950
ENSG00000162461
Solute carrier family 25 member 34
Tissue enhanced
Detected in many
adipose tissue:
43.3
heart:
25.9
skeletal muscle:
36.4
SLC25A36
ENSSSCG00000036855
ENSG00000114120
Solute carrier family 25 member 36
Low tissue specificity
Detected in all
SLC25A38
ENSSSCG00000029708
ENSG00000144659
Solute carrier family 25 member 38
Low tissue specificity
Detected in all
SLC25A39
ENSSSCG00000030167
ENSG00000013306
Solute carrier family 25 member 39
Tissue enhanced
Detected in all
adrenal gland:
135.2
SLC25A4
ENSSSCG00000015790
ENSG00000151729
Solute carrier family 25 member 4
Group enriched
Detected in all
heart:
222.5
skeletal muscle:
196.1
SLC25A40
ENSSSCG00000026177
ENSG00000075303
Solute carrier family 25 member 40
Low tissue specificity
Detected in all
SLC25A43
ENSSSCG00000012624
ENSG00000077713
Solute carrier family 25 member 43
Low tissue specificity
Detected in all
SLC25A44
ENSSSCG00000006494
ENSG00000160785
Solute carrier family 25 member 44
Low tissue specificity
Detected in all
SLC25A46
ENSSSCG00000014197
ENSG00000164209
Solute carrier family 25 member 46
Low tissue specificity
Detected in all
SLC25A5
ENSSSCG00000012623
ENSG00000005022
Solute carrier family 25 member 5
Tissue enhanced
Detected in all
large intestine:
65.1
SLC25A6
ENSSSCG00000033673
ENSG00000169100
ADP/ATP translocase 3
Low tissue specificity
Detected in all
SLC26A11
ENSSSCG00000021040
ENSG00000181045
Sodium-independent sulfate anion transporter
Tissue enriched
Detected in many
brain:
64.5
SLC26A4
ENSSSCG00000028969
ENSG00000091137
Solute carrier family 26 member 4
Tissue enhanced
Detected in all
esophagus:
25.5
SLC26A6
ENSSSCG00000011361
ENSG00000225697
Solute carrier family 26 member 6
Low tissue specificity
Detected in all
SLC27A1
ENSSSCG00000013879
ENSG00000130304
Long-chain fatty acid transport protein 1 precursor
Tissue enhanced
Detected in all
male glands:
48.1
SLC27A4
ENSSSCG00000005648
ENSG00000167114
Solute carrier family 27 member 4
Low tissue specificity
Detected in all
SLC28A1
ENSSSCG00000002632
ENSG00000156222
Sodium/nucleoside cotransporter 1
Low tissue specificity
Detected in all
SLC29A1
ENSSSCG00000001700
ENSG00000112759
Solute carrier family 29 member 1 (Augustine blood group)
Low tissue specificity
Detected in all
SLC29A2
ENSSSCG00000012941
ENSG00000174669
Solute carrier family 29 member 2
Tissue enhanced
Detected in many
retina:
25.3
skeletal muscle:
13.3
SLC29A3
ENSSSCG00000010277
ENSG00000198246
Solute carrier family 29 member 3
Tissue enhanced
Detected in many
thyroid gland:
26.6
SLC2A10
ENSSSCG00000007451
ENSG00000197496
Solute carrier family 2 member 10
Low tissue specificity
Detected in all
SLC2A4RG
ENSSSCG00000037562
ENSG00000125520
SLC2A4 regulator
Tissue enhanced
Detected in all
lens:
41.2
SLC2A6
ENSSSCG00000024166
ENSG00000160326
Solute carrier family 2 member 6
Tissue enhanced
Detected in many
brain:
17.6
lymphoid tissue:
13.1
stomach:
18.4
SLC2A7
ENSSSCG00000003390
ENSG00000197241
Solute carrier family 2 member 7
Low tissue specificity
Detected in all
SLC2A8
ENSSSCG00000005610
ENSG00000136856
Solute carrier family 2 member 8
Tissue enhanced
Detected in all
epididymis:
25.8
testis:
28.2
SLC2A9
ENSSSCG00000031700
ENSG00000109667
Solute carrier family 2 member 9
Tissue enhanced
Detected in all
synovial tissue:
17.6
SLC30A1
ENSSSCG00000039472
ENSG00000170385
Zinc transporter 1
Tissue enhanced
Detected in all
choroid plexus:
35.7
SLC30A4
ENSSSCG00000004668
ENSG00000104154
Zinc transporter 4
Low tissue specificity
Detected in many
SLC30A5
ENSSSCG00000022430
ENSG00000145740
Zinc transporter 5
Tissue enhanced
Detected in all
ovary:
64.6
SLC30A6
ENSSSCG00000008518
ENSG00000152683
Zinc transporter 6
Low tissue specificity
Detected in all
SLC30A7
ENSSSCG00000006860
ENSG00000162695
Zinc transporter 7
Tissue enhanced
Detected in all
male glands:
48.2
SLC30A9
ENSSSCG00000008801
ENSG00000014824
Zinc transporter 9
Low tissue specificity
Detected in all
SLC31A1
ENSSSCG00000034278
ENSG00000136868
High affinity copper uptake protein 1
Low tissue specificity
Detected in all
SLC35A1
ENSSSCG00000004304
ENSG00000164414
Solute carrier family 35 member A1
Low tissue specificity
Detected in all
SLC35A2
ENSSSCG00000024841
ENSG00000102100
Solute carrier family 35 member A2
Low tissue specificity
Detected in all
SLC35A3
ENSSSCG00000006871
ENSG00000117620
UDP-N-acetylglucosamine transporter
Tissue enhanced
Detected in all
male glands:
43.8
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