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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABHD3
ENSSSCG00000028010
ENSG00000158201
Abhydrolase domain containing 3
Tissue enhanced
Detected in all
choroid plexus:
71.1
ABHD4
ENSSSCG00000002051
ENSG00000100439
Abhydrolase domain containing 4
Tissue enhanced
Detected in all
testis:
61.8
ABHD5
ENSSSCG00000011297
ENSG00000011198
1-acylglycerol-3-phosphate O-acyltransferase ABHD5
Low tissue specificity
Detected in all
ABHD6
ENSSSCG00000011470
ENSG00000163686
Abhydrolase domain containing 6
Tissue enhanced
Detected in many
choroid plexus:
34.9
pineal gland:
33.7
ABHD8
ENSSSCG00000031877
ENSG00000127220
Abhydrolase domain containing 8
Tissue enhanced
Detected in all
brain:
25.1
ABI1
ENSSSCG00000024127
ENSG00000136754
Abl interactor 1
Low tissue specificity
Detected in all
ABI2
ENSSSCG00000034630
ENSG00000138443
Abl interactor 2
Tissue enhanced
Detected in many
brain:
29.8
lens:
41.1
ABI3BP
ENSSSCG00000011959
ENSG00000154175
ABI family member 3 binding protein
Group enriched
Detected in many
cartilage:
276.5
penis:
99.9
ABL1
ENSSSCG00000005706
ENSG00000097007
ABL proto-oncogene 1, non-receptor tyrosine kinase
Tissue enriched
Detected in all
cervix:
131.8
ABL2
ENSSSCG00000024674
ENSG00000143322
ABL proto-oncogene 2, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
ABLIM1
ENSSSCG00000010651
ENSG00000099204
Actin binding LIM protein 1
Tissue enhanced
Detected in all
heart:
201.3
ABLIM3
ENSSSCG00000014430
ENSG00000173210
Actin binding LIM protein family member 3
Tissue enhanced
Detected in many
brain:
53.4
ABO
ENSSSCG00000031532
ENSG00000148288
Histo-blood group ABO system transferase
Low tissue specificity
Detected in all
ABR
ENSSSCG00000017804
ENSG00000159842
Active breakpoint cluster region-related protein
Low tissue specificity
Detected in all
ABRAXAS1
ENSSSCG00000009234
ENSG00000163322
Abraxas 1, BRCA1 A complex subunit
Low tissue specificity
Detected in all
ABRAXAS2
ENSSSCG00000010737
ENSG00000165660
Abraxas 2, BRISC complex subunit
Low tissue specificity
Detected in all
ABT1
ENSSSCG00000038191
ENSG00000146109
Activator of basal transcription 1
Low tissue specificity
Detected in all
ABTB1
ENSSSCG00000024827
ENSG00000114626
Ankyrin repeat and BTB domain containing 1
Low tissue specificity
Detected in all
ABTB2
ENSSSCG00000013303
ENSG00000166016
Ankyrin repeat and BTB domain containing 2
Low tissue specificity
Detected in all
ACAA1
ENSSSCG00000011250
ENSG00000060971
Acetyl-CoA acyltransferase 1
Tissue enhanced
Detected in all
adipose tissue:
72.9
liver:
58.5
ACAA2
ENSSSCG00000004510
ENSG00000167315
3-ketoacyl-CoA thiolase, mitochondrial
Tissue enhanced
Detected in all
heart:
41.8
ACACA
ENSSSCG00000017694
ENSG00000278540
Acetyl-CoA carboxylase 1
Tissue enhanced
Detected in all
adipose tissue:
55.4
aorta:
56.6
ACAD11
ENSSSCG00000011629
ENSG00000240303
Acyl-CoA dehydrogenase family member 11
Tissue enhanced
Detected in all
liver:
52.6
ACAD9
ENSSSCG00000023354
ENSG00000177646
Acyl-CoA dehydrogenase family member 9
Low tissue specificity
Detected in all
ACADL
ENSSSCG00000016156
ENSG00000115361
Long-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in many
heart:
42.2
skeletal muscle:
44.2
ACADM
ENSSSCG00000003776
ENSG00000117054
Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
heart:
61.2
skeletal muscle:
88.4
ACADS
ENSSSCG00000009916
ENSG00000122971
Short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
Tissue enhanced
Detected in all
large intestine:
53.4
ACADSB
ENSSSCG00000010723
ENSG00000196177
Acyl-CoA dehydrogenase short/branched chain
Tissue enhanced
Detected in all
liver:
85.0
ACADVL
ENSSSCG00000017947
ENSG00000072778
Acyl-CoA dehydrogenase very long chain
Tissue enhanced
Detected in all
heart:
69.1
skeletal muscle:
69.1
ACAP1
ENSSSCG00000017943
ENSG00000072818
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
Tissue enhanced
Detected in many
lymphoid tissue:
47.0
stomach:
33.7
ACAP2
ENSSSCG00000031147
ENSG00000114331
ArfGAP with coiled-coil, ankyrin repeat and PH domains 2
Low tissue specificity
Detected in all
ACAP3
ENSSSCG00000003329
ENSG00000131584
ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
Low tissue specificity
Detected in all
ACAT1
ENSSSCG00000026153
ENSG00000075239
Acetyl-CoA acetyltransferase 1
Tissue enhanced
Detected in all
skeletal muscle:
70.4
ACAT2
ENSSSCG00000004049
ENSG00000120437
Acetyl-CoA acetyltransferase 2
Tissue enhanced
Detected in all
brain:
44.7
cornea:
51.1
ACBD3
ENSSSCG00000024180
ENSG00000182827
Golgi resident protein GCP60
Low tissue specificity
Detected in all
ACBD4
ENSSSCG00000017337
ENSG00000181513
Acyl-CoA binding domain containing 4
Low tissue specificity
Detected in all
ACBD5
ENSSSCG00000011064
ENSG00000107897
Acyl-CoA binding domain containing 5
Low tissue specificity
Detected in all
ACBD6
ENSSSCG00000015534
ENSG00000230124
Acyl-CoA binding domain containing 6
Low tissue specificity
Detected in all
ACCS
ENSSSCG00000013282
ENSG00000110455
1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
Low tissue specificity
Detected in all
ACCSL
ENSSSCG00000013283
ENSG00000205126
1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like
Tissue enhanced
Detected in all
epididymis:
26.1
ACD
ENSSSCG00000029590
ENSG00000102977
ACD, shelterin complex subunit and telomerase recruitment factor
Low tissue specificity
Detected in all
ACER1
ENSSSCG00000023969
ENSG00000167769
Alkaline ceramidase 1
Low tissue specificity
Detected in all
ACER2
ENSSSCG00000034213
ENSG00000177076
Alkaline ceramidase 2
Tissue enhanced
Detected in many
adipose tissue:
35.7
male glands:
43.4
ACIN1
ENSSSCG00000002034
ENSG00000100813
Apoptotic chromatin condensation inducer 1
Low tissue specificity
Detected in all
ACKR1
ENSSSCG00000036223
ENSG00000213088
Atypical chemokine receptor 1
Tissue enhanced
Detected in many
cartilage:
39.6
mesothelial tissue:
62.6
ACKR3
ENSSSCG00000016322
ENSG00000144476
Atypical chemokine receptor 3
Tissue enhanced
Detected in all
cartilage:
106.7
ACLY
ENSSSCG00000017421
ENSG00000131473
ATP-citrate synthase isoform 2
Tissue enhanced
Detected in all
aorta:
90.5
pineal gland:
90.2
ACO1
ENSSSCG00000023807
ENSG00000122729
Aconitase 1
Tissue enhanced
Detected in all
adipose tissue:
59.8
ACO2
ENSSSCG00000000064
ENSG00000100412
Aconitate hydratase, mitochondrial precursor
Tissue enhanced
Detected in all
heart:
137.6
skeletal muscle:
155.2
ACOD1
ENSSSCG00000009469
ENSG00000102794
Aconitate decarboxylase 1
Tissue enhanced
Detected in all
lymphoid tissue:
19.0
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