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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PKNOX1
ENSSSCG00000037663
ENSG00000160199
PBX/knotted 1 homeobox 1
Low tissue specificity
Detected in all
PKNOX2
ENSSSCG00000015211
ENSG00000165495
PBX/knotted 1 homeobox 2
Low tissue specificity
Detected in all
PKP2
ENSSSCG00000000528
ENSG00000057294
Plakophilin 2
Tissue enhanced
Detected in all
heart:
57.1
PKP4
ENSSSCG00000015878
ENSG00000144283
Plakophilin 4
Tissue enhanced
Detected in all
brain:
97.4
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLA2G10
ENSSSCG00000040569
ENSG00000069764
Phospholipase A2 group X
Low tissue specificity
Detected in all
PLA2G12A
ENSSSCG00000009139
ENSG00000123739
Phospholipase A2 group XIIA
Low tissue specificity
Detected in all
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLA2G1B
ENSSSCG00000029501
ENSG00000170890
Phospholipase A2, major isoenzyme precursor
Low tissue specificity
Detected in all
PLA2G4B
ENSSSCG00000004737
ENSG00000168970,ENSG00000243708
Cytosolic phospholipase A2 beta
Low tissue specificity
Detected in all
PLA2G5
ENSSSCG00000034429
ENSG00000127472
Phospholipase A2 group V
Low tissue specificity
Detected in all
PLA2G6
ENSSSCG00000000110
ENSG00000184381
Phospholipase A2 group VI
Low tissue specificity
Detected in all
PLA2G7
ENSSSCG00000001723
ENSG00000146070
Platelet-activating factor acetylhydrolase isoform 1 precursor
Tissue enhanced
Detected in all
lens:
62.1
PLAA
ENSSSCG00000005126
ENSG00000137055
Phospholipase A2 activating protein
Low tissue specificity
Detected in all
PLAC8L1
ENSSSCG00000014408
ENSG00000173261
PLAC8 like 1
Tissue enriched
Detected in many
testis:
40.3
PLAG1
ENSSSCG00000006247
ENSG00000181690
PLAG1 zinc finger
Low tissue specificity
Detected in many
PLAGL1
ENSSSCG00000004127
ENSG00000118495
Zinc finger protein PLAGL1
Low tissue specificity
Detected in all
PLAGL2
ENSSSCG00000007243
ENSG00000126003
PLAG1 like zinc finger 2
Low tissue specificity
Detected in all
PLAT
ENSSSCG00000007032
ENSG00000104368
Tissue-type plasminogen activator precursor
Low tissue specificity
Detected in many
PLAUR
ENSSSCG00000032434
ENSG00000011422
Plasminogen activator, urokinase receptor
Low tissue specificity
Detected in all
PLBD1
ENSSSCG00000026724
ENSG00000070019
Phospholipase B-like 1 precursor
Tissue enriched
Detected in all
ovary:
103.9
PLBD2
ENSSSCG00000009872
ENSG00000151176
Phospholipase B domain containing 2
Tissue enhanced
Detected in all
ovary:
78.8
PLCB3
ENSSSCG00000013034
ENSG00000149782
Phospholipase C beta 3
Tissue enhanced
Detected in many
small intestine:
63.0
PLCB4
ENSSSCG00000007058
ENSG00000101333
Phospholipase C beta 4
Tissue enhanced
Detected in all
salivary gland:
70.1
PLCD1
ENSSSCG00000027550
ENSG00000187091
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1
Tissue enhanced
Detected in all
cartilage:
55.6
PLCD3
ENSSSCG00000017338
ENSG00000161714
Phospholipase C delta 3
Low tissue specificity
Detected in all
PLCE1
ENSSSCG00000010483
ENSG00000138193
Phospholipase C epsilon 1
Tissue enhanced
Detected in many
cartilage:
33.9
stomach:
42.4
PLCG1
ENSSSCG00000007356
ENSG00000124181
Phospholipase C gamma 1
Low tissue specificity
Detected in all
PLCG2
ENSSSCG00000002688
ENSG00000197943
Phospholipase C gamma 2
Tissue enhanced
Detected in many
cartilage:
44.5
lymphoid tissue:
44.7
PLD1
ENSSSCG00000011750
ENSG00000075651
Phospholipase D1
Low tissue specificity
Detected in many
PLD2
ENSSSCG00000017912
ENSG00000129219
Phospholipase D2
Low tissue specificity
Detected in all
PLD3
ENSSSCG00000025109
ENSG00000105223
Phospholipase D3
Tissue enhanced
Detected in all
brain:
83.4
pituitary gland:
95.2
PLEC
ENSSSCG00000039094
ENSG00000178209
Plectin
Low tissue specificity
Detected in all
PLEK2
ENSSSCG00000002290
ENSG00000100558
Pleckstrin 2
Low tissue specificity
Detected in many
PLEKHA1
ENSSSCG00000010702
ENSG00000107679
Pleckstrin homology domain containing A1
Low tissue specificity
Detected in all
PLEKHA2
ENSSSCG00000033367
ENSG00000169499
Pleckstrin homology domain containing A2
Tissue enhanced
Detected in all
lens:
59.0
PLEKHA3
ENSSSCG00000016000
ENSG00000116095
Pleckstrin homology domain-containing family A member 3
Low tissue specificity
Detected in all
PLEKHA5
ENSSSCG00000000588
ENSG00000052126
Pleckstrin homology domain containing A5
Low tissue specificity
Detected in all
PLEKHA8
ENSSSCG00000016682
ENSG00000106086
Pleckstrin homology domain containing A8
Low tissue specificity
Detected in all
PLEKHB1
ENSSSCG00000014827
ENSG00000021300
Pleckstrin homology domain-containing family B member 1
Group enriched
Detected in many
brain:
163.6
pineal gland:
61.6
retina:
103.4
vagus nerve:
86.5
PLEKHD1
ENSSSCG00000002309
ENSG00000175985
Pleckstrin homology domain-containing family D member 1
Low tissue specificity
Detected in all
PLEKHF2
ENSSSCG00000039549
ENSG00000175895
Pleckstrin homology and FYVE domain containing 2
Tissue enhanced
Detected in all
retina:
33.4
PLEKHG1
ENSSSCG00000032778
ENSG00000120278
Pleckstrin homology and RhoGEF domain containing G1
Tissue enhanced
Detected in all
epididymis:
44.9
PLEKHG3
ENSSSCG00000002276
ENSG00000126822
Pleckstrin homology and RhoGEF domain containing G3
Low tissue specificity
Detected in all
PLEKHG5
ENSSSCG00000003376
ENSG00000171680
Pleckstrin homology and RhoGEF domain containing G5
Tissue enhanced
Detected in all
vagus nerve:
45.9
PLEKHH1
ENSSSCG00000002292
ENSG00000054690
Pleckstrin homology, MyTH4 and FERM domain containing H1
Tissue enhanced
Detected in many
brain:
75.3
male glands:
20.5
PLEKHH2
ENSSSCG00000008456
ENSG00000152527
Pleckstrin homology, MyTH4 and FERM domain containing H2
Low tissue specificity
Detected in all
PLEKHH3
ENSSSCG00000017391
ENSG00000068137
Pleckstrin homology, MyTH4 and FERM domain containing H3
Low tissue specificity
Detected in all
PLEKHM1
ENSSSCG00000017325
ENSG00000225190
Pleckstrin homology and RUN domain containing M1
Low tissue specificity
Detected in all
PLEKHM2
ENSSSCG00000003468
ENSG00000116786
Pleckstrin homology and RUN domain containing M2
Low tissue specificity
Detected in all
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