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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NTN1
ENSSSCG00000017993
ENSG00000065320
Netrin-1 precursor
Tissue enriched
Detected in many
cartilage:
142.9
NTN3
ENSSSCG00000008054
ENSG00000162068
Netrin 3
Tissue enhanced
Detected in many
epididymis:
17.2
NTN4
ENSSSCG00000000896
ENSG00000074527
Netrin 4
Tissue enhanced
Detected in many
cartilage:
59.6
penis:
30.7
NTNG2
ENSSSCG00000005723
ENSG00000196358
Netrin G2
Tissue enhanced
Detected in many
brain:
20.3
lens:
22.6
retina:
62.4
NTPCR
ENSSSCG00000010166
ENSG00000135778
Nucleoside-triphosphatase, cancer-related
Tissue enhanced
Detected in all
lens:
46.7
NTRK1
ENSSSCG00000006464
ENSG00000198400
Neurotrophic receptor tyrosine kinase 1
Tissue enriched
Detected in all
adrenal gland:
37.7
NTRK2
ENSSSCG00000010959
ENSG00000148053
Neurotrophic receptor tyrosine kinase 2
Tissue enhanced
Detected in many
brain:
63.2
cornea:
45.4
NTRK3
ENSSSCG00000005106
ENSG00000140538
Neurotrophic receptor tyrosine kinase 3
Tissue enhanced
Detected in many
brain:
32.2
ovary:
35.6
NUAK1
ENSSSCG00000032861
ENSG00000074590
NUAK family kinase 1
Low tissue specificity
Detected in all
NUAK2
ENSSSCG00000038471
ENSG00000163545
NUAK family kinase 2
Low tissue specificity
Detected in all
NUB1
ENSSSCG00000016438
ENSG00000013374
Negative regulator of ubiquitin like proteins 1
Low tissue specificity
Detected in all
NUBP1
ENSSSCG00000024488
ENSG00000103274
Cytosolic Fe-S cluster assembly factor NUBP1
Tissue enhanced
Detected in all
heart:
57.5
NUBP2
ENSSSCG00000008014
ENSG00000095906
Cytosolic Fe-S cluster assembly factor NUBP2
Low tissue specificity
Detected in all
NUBPL
ENSSSCG00000001968
ENSG00000151413
Nucleotide binding protein like
Low tissue specificity
Detected in all
NUCB1
ENSSSCG00000003150
ENSG00000104805
Nucleobindin-1 precursor
Low tissue specificity
Detected in all
NUCKS1
ENSSSCG00000022398
ENSG00000069275
Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1
Low tissue specificity
Detected in all
NUDC
ENSSSCG00000003566
ENSG00000090273
Nuclear migration protein nudC
Low tissue specificity
Detected in all
NUDCD1
ENSSSCG00000006029
ENSG00000120526
NudC domain containing 1
Low tissue specificity
Detected in all
NUDCD2
ENSSSCG00000032806
ENSG00000170584
NudC domain containing 2
Low tissue specificity
Detected in all
NUDCD3
ENSSSCG00000016747
ENSG00000015676
NudC domain containing 3
Low tissue specificity
Detected in all
NUDT1
ENSSSCG00000033926
ENSG00000106268
7,8-dihydro-8-oxoguanine triphosphatase
Low tissue specificity
Detected in all
NUDT12
ENSSSCG00000014187
ENSG00000112874
Nudix hydrolase 12
Low tissue specificity
Detected in all
NUDT13
ENSSSCG00000025492
ENSG00000166321
Nudix hydrolase 13
Low tissue specificity
Detected in all
NUDT14
ENSSSCG00000002557
ENSG00000183828
Nudix hydrolase 14
Low tissue specificity
Detected in all
NUDT16
ENSSSCG00000032424
ENSG00000198585
Nudix hydrolase 16
Low tissue specificity
Detected in all
NUDT16L1
ENSSSCG00000035999
ENSG00000168101
Nudix hydrolase 16 like 1
Low tissue specificity
Detected in all
NUDT17
ENSSSCG00000006690
ENSG00000186364
Nudix hydrolase 17
Low tissue specificity
Detected in all
NUDT18
ENSSSCG00000009615
ENSG00000275074
Nudix hydrolase 18
Low tissue specificity
Detected in all
NUDT19
ENSSSCG00000036294
ENSG00000213965
Nudix hydrolase 19
Low tissue specificity
Detected in all
NUDT2
ENSSSCG00000010981
ENSG00000164978
Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]
Low tissue specificity
Detected in all
NUDT21
ENSSSCG00000034521
ENSG00000167005
Cleavage and polyadenylation specificity factor subunit 5
Low tissue specificity
Detected in all
NUDT22
ENSSSCG00000013039
ENSG00000149761
Nudix hydrolase 22
Low tissue specificity
Detected in all
NUDT3
ENSSSCG00000031593
ENSG00000272325
Nudix hydrolase 3
Low tissue specificity
Detected in all
NUDT5
ENSSSCG00000011113
ENSG00000165609
Nudix hydrolase 5
Low tissue specificity
Detected in all
NUDT6
ENSSSCG00000009085
ENSG00000170917
Nudix hydrolase 6
Tissue enhanced
Detected in all
choroid plexus:
35.3
NUDT7
ENSSSCG00000002697
ENSG00000140876
Nudix hydrolase 7
Tissue enhanced
Detected in all
choroid plexus:
45.4
NUDT8
ENSSSCG00000035645
ENSG00000167799
Nudix hydrolase 8
Low tissue specificity
Detected in all
NUDT9
ENSSSCG00000009223
ENSG00000170502
Nudix hydrolase 9
Low tissue specificity
Detected in all
NUF2
ENSSSCG00000006333
ENSG00000143228
NUF2, NDC80 kinetochore complex component
Tissue enhanced
Detected in many
lymphoid tissue:
22.2
NUFIP1
ENSSSCG00000009420
ENSG00000083635
NUFIP1, FMR1 interacting protein 1
Low tissue specificity
Detected in all
NUFIP2
ENSSSCG00000017785
ENSG00000108256
NUFIP2, FMR1 interacting protein 2
Low tissue specificity
Detected in all
NUGGC
ENSSSCG00000009673
ENSG00000189233
Nuclear GTPase, germinal center associated
Tissue enhanced
Detected in all
liver:
39.4
lymphoid tissue:
40.6
NUMA1
ENSSSCG00000014802
ENSG00000137497
Nuclear mitotic apparatus protein 1
Low tissue specificity
Detected in all
NUMB
ENSSSCG00000022178
ENSG00000133961
NUMB, endocytic adaptor protein
Low tissue specificity
Detected in all
NUMBL
ENSSSCG00000023228
ENSG00000105245
NUMB like, endocytic adaptor protein
Low tissue specificity
Detected in all
NUP107
ENSSSCG00000000486
ENSG00000111581
Nucleoporin 107
Low tissue specificity
Detected in all
NUP133
ENSSSCG00000010189
ENSG00000069248
Nucleoporin 133
Low tissue specificity
Detected in all
NUP153
ENSSSCG00000026034
ENSG00000124789
Nucleoporin 153
Low tissue specificity
Detected in all
NUP155
ENSSSCG00000016845
ENSG00000113569
Nucleoporin 155
Tissue enhanced
Detected in all
testis:
45.0
NUP160
ENSSSCG00000013223
ENSG00000030066
Nucleoporin 160
Low tissue specificity
Detected in all
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