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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NLK
ENSSSCG00000017756
ENSG00000087095
Nemo like kinase
Low tissue specificity
Detected in all
NLN
ENSSSCG00000016778
ENSG00000123213
Neurolysin, mitochondrial
Tissue enhanced
Detected in all
liver:
36.2
NLRC4
ENSSSCG00000026213
ENSG00000091106
NLR family CARD domain containing 4
Low tissue specificity
Detected in some
NLRP12
ENSSSCG00000003251
ENSG00000142405
NLR family pyrin domain containing 12
Low tissue specificity
Detected in all
NLRP13
ENSSSCG00000024227
ENSG00000173572
NLR family pyrin domain containing 13
Tissue enhanced
Detected in some
lung:
1.1
lymphoid tissue:
3.5
ovary:
1.5
stomach:
1.1
NLRP3
ENSSSCG00000013940
ENSG00000162711
NACHT, LRR and PYD domains-containing protein 3
Low tissue specificity
Detected in all
NLRP8
ENSSSCG00000003315
ENSG00000179709
NLR family pyrin domain containing 8
Tissue enhanced
Detected in some
retina:
2.2
NLRX1
ENSSSCG00000015113
ENSG00000160703
NLR family member X1
Tissue enhanced
Detected in all
retina:
64.9
NMBR
ENSSSCG00000036250
ENSG00000135577
Neuromedin-B receptor
Low tissue specificity
Detected in all
NMD3
ENSSSCG00000022952
ENSG00000169251
NMD3 ribosome export adaptor
Low tissue specificity
Detected in all
NME1
ENSSSCG00000038348
ENSG00000239672
Nucleoside diphosphate kinase A
Low tissue specificity
Detected in all
NME2
ENSSSCG00000017591
ENSG00000011052,ENSG00000243678
Nucleoside diphosphate kinase B
Tissue enhanced
Detected in all
male glands:
143.6
NME3
ENSSSCG00000008017
ENSG00000103024
Nucleoside diphosphate kinase 3 isoform 2 precursor
Low tissue specificity
Detected in all
NME4
ENSSSCG00000007986
ENSG00000103202
Nucleoside diphosphate kinase, mitochondrial
Low tissue specificity
Detected in many
NME5
ENSSSCG00000027997
ENSG00000112981
NME/NM23 family member 5
Tissue enhanced
Detected in many
choroid plexus:
23.6
fallopian tube:
22.8
pineal gland:
25.4
NME7
ENSSSCG00000006294
ENSG00000143156
NME/NM23 family member 7
Low tissue specificity
Detected in all
NMI
ENSSSCG00000022011
ENSG00000123609
N-myc and STAT interactor
Low tissue specificity
Detected in many
NMNAT1
ENSSSCG00000003400
ENSG00000173614
Nicotinamide nucleotide adenylyltransferase 1
Tissue enhanced
Detected in all
liver:
34.5
NMNAT2
ENSSSCG00000015557
ENSG00000157064
Nicotinamide nucleotide adenylyltransferase 2
Tissue enhanced
Detected in many
brain:
44.6
pituitary gland:
18.1
NMNAT3
ENSSSCG00000031142
ENSG00000163864
Nicotinamide nucleotide adenylyltransferase 3
Tissue enriched
Detected in many
lens:
75.5
NMRAL1
ENSSSCG00000007943
ENSG00000153406
NmrA like redox sensor 1
Low tissue specificity
Detected in all
NMRK1
ENSSSCG00000005272
ENSG00000106733
Nicotinamide riboside kinase 1
Tissue enhanced
Detected in all
liver:
42.4
NMT1
ENSSSCG00000017339
ENSG00000136448
N-myristoyltransferase 1
Tissue enhanced
Detected in all
lens:
82.6
NMU
ENSSSCG00000027954
ENSG00000109255
Neuromedin U
Tissue enhanced
Detected in many
cornea:
21.5
NMUR2
ENSSSCG00000017076
ENSG00000132911
Neuromedin-U receptor 2
Low tissue specificity
Detected in all
NNAT
ENSSSCG00000007336
ENSG00000053438
Neuronatin
Tissue enriched
Detected in many
pituitary gland:
708.6
NNT
ENSSSCG00000016877
ENSG00000112992
Nicotinamide nucleotide transhydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
81.1
NOA1
ENSSSCG00000025792
ENSG00000084092
Nitric oxide associated 1
Low tissue specificity
Detected in all
NOB1
ENSSSCG00000002753
ENSG00000141101
NIN1/PSMD8 binding protein 1 homolog
Low tissue specificity
Detected in all
NOC2L
ENSSSCG00000023973
ENSG00000188976
NOC2 like nucleolar associated transcriptional repressor
Low tissue specificity
Detected in all
NOC3L
ENSSSCG00000010484
ENSG00000173145
Nucleolar complex protein 3 homolog
Low tissue specificity
Detected in all
NOC4L
ENSSSCG00000009739
ENSG00000184967
Nucleolar complex associated 4 homolog
Low tissue specificity
Detected in all
NOCT
ENSSSCG00000024596
ENSG00000151014
Nocturnin
Low tissue specificity
Detected in all
NOD1
ENSSSCG00000016678
ENSG00000106100
Nucleotide-binding oligomerization domain-containing protein 1
Tissue enhanced
Detected in many
lens:
42.6
NODAL
ENSSSCG00000039399
ENSG00000156574
Nodal growth differentiation factor
Tissue enhanced
Detected in many
cartilage:
7.2
NOL10
ENSSSCG00000008635
ENSG00000115761
Nucleolar protein 10
Low tissue specificity
Detected in all
NOL11
ENSSSCG00000017275
ENSG00000130935
Nucleolar protein 11
Low tissue specificity
Detected in all
NOL3
ENSSSCG00000040125
ENSG00000140939
Nucleolar protein 3
Tissue enhanced
Detected in many
lens:
31.6
skeletal muscle:
57.0
NOL4
ENSSSCG00000003737
ENSG00000101746
Nucleolar protein 4
Tissue enhanced
Detected in all
brain:
31.4
pituitary gland:
33.5
NOL4L
ENSSSCG00000007249
ENSG00000197183
Nucleolar protein 4 like
Low tissue specificity
Detected in all
NOL6
ENSSSCG00000010990
ENSG00000165271
Nucleolar protein 6
Low tissue specificity
Detected in all
NOL7
ENSSSCG00000040816
ENSG00000225921
Nucleolar protein 7
Low tissue specificity
Detected in all
NOL8
ENSSSCG00000008069
ENSG00000198000
Nucleolar protein 8
Low tissue specificity
Detected in all
NOL9
ENSSSCG00000030253
ENSG00000162408
Nucleolar protein 9
Low tissue specificity
Detected in all
NOLC1
ENSSSCG00000010576
ENSG00000166197
Nucleolar and coiled-body phosphoprotein 1
Low tissue specificity
Detected in all
NOM1
ENSSSCG00000016411
ENSG00000146909
Nucleolar protein with MIF4G domain 1
Low tissue specificity
Detected in all
NONO
ENSSSCG00000023245
ENSG00000147140
Non-POU domain containing octamer binding
Low tissue specificity
Detected in all
NOP10
ENSSSCG00000036960
ENSG00000182117
NOP10 ribonucleoprotein
Low tissue specificity
Detected in all
NOP14
ENSSSCG00000008693
ENSG00000087269
NOP14 nucleolar protein
Low tissue specificity
Detected in all
NOP2
ENSSSCG00000000696
ENSG00000111641
Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase
Tissue enhanced
Detected in all
epididymis:
67.1
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