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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000016545
ENSG00000106554
MICOS complex subunit MIC19
Tissue enhanced
Detected in all
skeletal muscle:
94.5
na
ENSSSCG00000016548
ENSG00000128567
Low tissue specificity
Detected in all
na
ENSSSCG00000016571
Low tissue specificity
Detected in many
na
ENSSSCG00000016597
ENSG00000128513
Protection of telomeres protein 1
Low tissue specificity
Detected in all
na
ENSSSCG00000016649
Low tissue specificity
Detected in many
na
ENSSSCG00000016650
ENSG00000184903
Low tissue specificity
Detected in all
na
ENSSSCG00000016651
Low tissue specificity
Detected in all
na
ENSSSCG00000016679
ENSG00000006625
Low tissue specificity
Detected in all
na
ENSSSCG00000016685
ENSG00000122574
Tissue enhanced
Detected in many
brain:
62.4
male glands:
43.3
skeletal muscle:
34.1
na
ENSSSCG00000016687
ENSG00000106069,ENSG00000285162
Tissue enhanced
Detected in many
brain:
73.2
na
ENSSSCG00000016711
Low tissue specificity
Detected in all
na
ENSSSCG00000016725
ENSG00000136205
Tissue enhanced
Detected in all
stomach:
70.9
na
ENSSSCG00000016731
Whey acidic protein
Low tissue specificity
Detected in all
na
ENSSSCG00000016737
Peptidyl-prolyl cis-trans isomerase A Peptidyl-prolyl cis-trans isomerase A, N-terminally processed
Tissue enhanced
Detected in all
lens:
157.3
na
ENSSSCG00000016758
Low tissue specificity
Detected in all
na
ENSSSCG00000016768
ENSG00000168303
Low tissue specificity
Detected in all
na
ENSSSCG00000016777
ENSG00000170260
Low tissue specificity
Detected in all
na
ENSSSCG00000016806
Tissue enhanced
Detected in many
brain:
27.3
choroid plexus:
30.3
na
ENSSSCG00000016823
ENSG00000082196
Complement C1q tumor necrosis factor-related protein 3 precursor
Tissue enhanced
Detected in all
cornea:
58.4
smooth muscle:
46.9
na
ENSSSCG00000016837
Tissue enhanced
Detected in many
liver:
41.6
na
ENSSSCG00000016868
ENSG00000177721
Tissue enhanced
Detected in all
ovary:
24.2
na
ENSSSCG00000016876
ENSG00000172244
Low tissue specificity
Detected in all
na
ENSSSCG00000016886
Low tissue specificity
Detected in all
na
ENSSSCG00000016898
Low tissue specificity
Detected in all
na
ENSSSCG00000016949
ENSG00000113597
Trafficking protein particle complex subunit 13
Low tissue specificity
Detected in all
na
ENSSSCG00000016969
Tissue enhanced
Detected in all
lens:
55.7
testis:
106.3
na
ENSSSCG00000016970
Survival motor neuron protein
Low tissue specificity
Detected in all
na
ENSSSCG00000016982
ENSG00000145919,ENSG00000228075
Low tissue specificity
Detected in all
na
ENSSSCG00000016990
ENSG00000113732
V-type proton ATPase subunit e 1
Low tissue specificity
Detected in all
na
ENSSSCG00000017018
ENSG00000145934
Tissue enhanced
Detected in many
brain:
20.0
pineal gland:
16.1
skin:
21.0
na
ENSSSCG00000017038
ENSG00000170234
Tissue enhanced
Detected in all
thyroid gland:
71.8
na
ENSSSCG00000017061
ENSG00000113249
Hepatitis A virus cellular receptor 1 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000017065
ENSG00000082515
Tissue enhanced
Detected in all
ovary:
79.0
na
ENSSSCG00000017103
ENSG00000145545
Tissue enhanced
Detected in many
breast:
42.6
salivary gland:
85.9
testis:
54.3
thyroid gland:
38.3
na
ENSSSCG00000017108
Low tissue specificity
Detected in all
na
ENSSSCG00000017128
ENSG00000169660
Low tissue specificity
Detected in all
na
ENSSSCG00000017129
ENSG00000102128,ENSG00000141542,ENSG00000172476
Low tissue specificity
Detected in many
na
ENSSSCG00000017202
Histone H3.3
Low tissue specificity
Detected in all
na
ENSSSCG00000017235
Low tissue specificity
Detected in all
na
ENSSSCG00000017239
ENSG00000172809
Tissue enhanced
Detected in all
male glands:
300.6
na
ENSSSCG00000017331
ENSG00000184361
Tissue enriched
Detected in all
testis:
46.8
na
ENSSSCG00000017345
ENSG00000167131,ENSG00000214447
Tissue enhanced
Detected in all
testis:
14.6
na
ENSSSCG00000017352
ENSG00000180329
Low tissue specificity
Detected in all
na
ENSSSCG00000017394
Low tissue specificity
Detected in all
na
ENSSSCG00000017419
ENSG00000168259
Tissue enhanced
Detected in all
lens:
90.3
na
ENSSSCG00000017446
Low tissue specificity
Detected in many
na
ENSSSCG00000017463
Tissue enhanced
Detected in many
epididymis:
27.8
na
ENSSSCG00000017507
Low tissue specificity
Detected in all
na
ENSSSCG00000017529
Low tissue specificity
Detected in all
na
ENSSSCG00000017544
ENSG00000159199
ATP synthase F(0) complex subunit C1, mitochondrial
Tissue enhanced
Detected in all
heart:
72.2
skeletal muscle:
72.6
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