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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13607 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AQP8
ENSSSCG00000031865
ENSG00000103375
Aquaporin-8
Tissue enhanced
Detected in all
large intestine:
45.0
AQR
ENSSSCG00000004802
ENSG00000021776
Aquarius intron-binding spliceosomal factor
Low tissue specificity
Detected in all
ARAF
ENSSSCG00000012275
ENSG00000078061
Serine/threonine-protein kinase A-Raf
Low tissue specificity
Detected in all
ARAP1
ENSSSCG00000014817
ENSG00000186635
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
Low tissue specificity
Detected in all
ARAP2
ENSSSCG00000008768
ENSG00000047365
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
Tissue enhanced
Detected in many
brain:
52.1
lymphoid tissue:
46.8
thyroid gland:
49.8
ARCN1
ENSSSCG00000030053
ENSG00000095139
Archain 1
Tissue enhanced
Detected in all
male glands:
114.8
AREG
ENSSSCG00000008963
ENSG00000109321
Amphiregulin precursor
Tissue enhanced
Detected in all
ovary:
33.6
AREL1
ENSSSCG00000002370
ENSG00000119682
Apoptosis resistant E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
ARF3
ENSSSCG00000031381
ENSG00000134287
ADP-ribosylation factor 3
Tissue enhanced
Detected in all
brain:
89.9
ARF4
ENSSSCG00000031791
ENSG00000168374
ADP ribosylation factor 4
Tissue enhanced
Detected in all
male glands:
78.3
ARF5
ENSSSCG00000016593
ENSG00000004059
ADP-ribosylation factor 5
Low tissue specificity
Detected in all
ARF6
ENSSSCG00000005012
ENSG00000165527
ADP-ribosylation factor 6
Low tissue specificity
Detected in all
ARFGAP1
ENSSSCG00000032235
ENSG00000101199
ADP ribosylation factor GTPase activating protein 1
Low tissue specificity
Detected in all
ARFGAP2
ENSSSCG00000013245
ENSG00000149182
ADP-ribosylation factor GTPase-activating protein 2
Low tissue specificity
Detected in all
ARFGAP3
ENSSSCG00000000037
ENSG00000242247
ADP ribosylation factor GTPase activating protein 3
Low tissue specificity
Detected in all
ARFGEF1
ENSSSCG00000006201
ENSG00000066777
ADP ribosylation factor guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
ARFGEF2
ENSSSCG00000007460
ENSG00000124198
ADP ribosylation factor guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
ARFIP1
ENSSSCG00000009010
ENSG00000164144
Arfaptin-1
Low tissue specificity
Detected in all
ARFIP2
ENSSSCG00000014624
ENSG00000132254
ADP ribosylation factor interacting protein 2
Low tissue specificity
Detected in all
ARG2
ENSSSCG00000002294
ENSG00000081181
Arginase 2
Low tissue specificity
Detected in all
ARGLU1
ENSSSCG00000009536
ENSG00000134884
Arginine and glutamate rich 1
Low tissue specificity
Detected in all
ARHGAP1
ENSSSCG00000013256
ENSG00000175220
Rho GTPase activating protein 1
Tissue enhanced
Detected in all
lens:
114.8
ARHGAP10
ENSSSCG00000009029
ENSG00000071205
Rho GTPase activating protein 10
Low tissue specificity
Detected in all
ARHGAP12
ENSSSCG00000011026
ENSG00000165322
Rho GTPase activating protein 12
Tissue enriched
Detected in all
lens:
120.9
ARHGAP17
ENSSSCG00000031488
ENSG00000140750
Rho GTPase activating protein 17
Low tissue specificity
Detected in all
ARHGAP18
ENSSSCG00000004205
ENSG00000146376
Rho GTPase activating protein 18
Tissue enhanced
Detected in all
mesothelial tissue:
56.1
ARHGAP21
ENSSSCG00000011074
ENSG00000107863
Rho GTPase activating protein 21
Low tissue specificity
Detected in all
ARHGAP22
ENSSSCG00000010381
ENSG00000128805
Rho GTPase activating protein 22
Tissue enhanced
Detected in many
synovial tissue:
28.6
ARHGAP23
ENSSSCG00000018058
ENSG00000275832
Rho GTPase activating protein 23
Tissue enhanced
Detected in many
brain:
47.5
ARHGAP24
ENSSSCG00000009229
ENSG00000138639
Rho GTPase activating protein 24
Tissue enhanced
Detected in all
kidney:
44.3
lens:
48.2
pineal gland:
47.9
ARHGAP26
ENSSSCG00000014399
ENSG00000145819
Rho GTPase activating protein 26
Low tissue specificity
Detected in all
ARHGAP28
ENSSSCG00000021612
ENSG00000088756
Rho GTPase activating protein 28
Low tissue specificity
Detected in many
ARHGAP29
ENSSSCG00000006889
ENSG00000137962
Rho GTPase activating protein 29
Low tissue specificity
Detected in all
ARHGAP32
ENSSSCG00000015238
ENSG00000134909
Rho GTPase activating protein 32
Tissue enhanced
Detected in all
brain:
44.2
ARHGAP33
ENSSSCG00000039135
ENSG00000004777
Rho GTPase activating protein 33
Group enriched
Detected in many
brain:
18.6
lymphoid tissue:
14.2
testis:
39.4
ARHGAP35
ENSSSCG00000003107
ENSG00000160007
Rho GTPase activating protein 35
Low tissue specificity
Detected in all
ARHGAP36
ENSSSCG00000012669
ENSG00000147256
Rho GTPase activating protein 36
Group enriched
Detected in some
brain:
31.3
pituitary gland:
25.8
testis:
24.8
ARHGAP39
ENSSSCG00000005894
ENSG00000147799
Rho GTPase activating protein 39
Tissue enhanced
Detected in all
vagus nerve:
45.6
ARHGAP42
ENSSSCG00000014976
ENSG00000165895
Rho GTPase activating protein 42
Low tissue specificity
Detected in all
ARHGAP5
ENSSSCG00000001966
ENSG00000100852
Rho GTPase activating protein 5
Low tissue specificity
Detected in all
ARHGAP9
ENSSSCG00000000437
ENSG00000123329
Rho GTPase activating protein 9
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
stomach:
22.3
ARHGDIA
ENSSSCG00000034058
ENSG00000141522
Rho GDP-dissociation inhibitor 1
Low tissue specificity
Detected in all
ARHGDIG
ENSSSCG00000038979
ENSG00000242173
Rho GDP dissociation inhibitor gamma
Tissue enriched
Detected in some
brain:
41.6
ARHGEF10
ENSSSCG00000023419
ENSG00000104728
Rho guanine nucleotide exchange factor 10
Tissue enhanced
Detected in all
vagus nerve:
83.9
ARHGEF10L
ENSSSCG00000003486
ENSG00000074964
Rho guanine nucleotide exchange factor 10 like
Low tissue specificity
Detected in all
ARHGEF11
ENSSSCG00000006461
ENSG00000132694
Rho guanine nucleotide exchange factor 11
Low tissue specificity
Detected in all
ARHGEF12
ENSSSCG00000015129
ENSG00000196914
Rho guanine nucleotide exchange factor 12
Low tissue specificity
Detected in all
ARHGEF17
ENSSSCG00000014822
ENSG00000110237
Rho guanine nucleotide exchange factor 17
Low tissue specificity
Detected in all
ARHGEF19
ENSSSCG00000003472
ENSG00000142632
Rho guanine nucleotide exchange factor 19
Tissue enhanced
Detected in all
cartilage:
46.8
ARHGEF2
ENSSSCG00000006502
ENSG00000116584
Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
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