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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16026 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BNIP1
ENSSSCG00000016985
ENSG00000113734
BCL2 interacting protein 1
Low tissue specificity
Detected in all
BNIP2
ENSSSCG00000004582
ENSG00000140299
BCL2 interacting protein 2
Low tissue specificity
Detected in all
BNIP3
ENSSSCG00000024388
ENSG00000176171
BCL2 interacting protein 3
Tissue enhanced
Detected in all
cartilage:
175.1
lens:
149.3
BNIP3L
ENSSSCG00000009658
ENSG00000104765
BCL2 interacting protein 3 like
Low tissue specificity
Detected in all
BNIPL
ENSSSCG00000006640
ENSG00000163141
BCL2 interacting protein like
Tissue enhanced
Detected in many
mouth:
38.6
skin:
36.8
BOC
ENSSSCG00000025826
ENSG00000144857
BOC cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
46.5
BOD1L1
ENSSSCG00000008735
ENSG00000038219
Biorientation of chromosomes in cell division 1 like 1
Low tissue specificity
Detected in all
BOK
ENSSSCG00000032684
ENSG00000176720
BOK, BCL2 family apoptosis regulator
Tissue enhanced
Detected in all
thyroid gland:
55.8
BOLA1
ENSSSCG00000006667
ENSG00000178096
BolA-like protein 1
Tissue enhanced
Detected in all
male glands:
31.8
BOP1
ENSSSCG00000005920
ENSG00000261236
Block of proliferation 1
Low tissue specificity
Detected in all
BORA
ENSSSCG00000025120
ENSG00000136122
Bora, aurora kinase A activator
Low tissue specificity
Detected in all
BORCS6
ENSSSCG00000028788
ENSG00000196544
BLOC-1 related complex subunit 6
Low tissue specificity
Detected in all
BPGM
ENSSSCG00000039425
ENSG00000172331
Bisphosphoglycerate mutase
Group enriched
Detected in all
choroid plexus:
64.2
lens:
67.5
BPHL
ENSSSCG00000001008
ENSG00000137274
Valacyclovir hydrolase precursor
Low tissue specificity
Detected in all
BPIFC
ENSSSCG00000000157
ENSG00000184459
BPI fold containing family C
Tissue enhanced
Detected in all
skin:
35.8
BPNT1
ENSSSCG00000010822
ENSG00000162813
3'(2'), 5'-bisphosphate nucleotidase 1
Low tissue specificity
Detected in all
BRAF
ENSSSCG00000016494
ENSG00000157764
B-Raf proto-oncogene, serine/threonine kinase
Low tissue specificity
Detected in all
BRAP
ENSSSCG00000040595
ENSG00000089234
BRCA1 associated protein
Low tissue specificity
Detected in all
BRAT1
ENSSSCG00000007563
ENSG00000106009
BRCA1 associated ATM activator 1
Low tissue specificity
Detected in all
BRCA1
ENSSSCG00000022101
ENSG00000012048
BRCA1, DNA repair associated
Low tissue specificity
Detected in all
BRCA2
ENSSSCG00000029039
ENSG00000139618
BRCA2, DNA repair associated
Tissue enhanced
Detected in many
lymphoid tissue:
17.0
BRCC3
ENSSSCG00000012813
ENSG00000185515
Lys-63-specific deubiquitinase BRCC36
Low tissue specificity
Detected in all
BRD1
ENSSSCG00000032820
ENSG00000100425
Bromodomain containing 1
Low tissue specificity
Detected in all
BRD2
ENSSSCG00000001471
ENSG00000204256
Bromodomain-containing protein 2
Low tissue specificity
Detected in all
BRD3
ENSSSCG00000005749
ENSG00000169925
Bromodomain containing 3
Low tissue specificity
Detected in all
BRD4
ENSSSCG00000022227
ENSG00000141867
Bromodomain-containing protein 4
Low tissue specificity
Detected in all
BRD7
ENSSSCG00000021644
ENSG00000166164
Bromodomain containing 7
Low tissue specificity
Detected in all
BRD8
ENSSSCG00000014327
ENSG00000112983
Bromodomain containing 8
Low tissue specificity
Detected in all
BRD9
ENSSSCG00000035118
ENSG00000028310
Bromodomain containing 9
Low tissue specificity
Detected in all
BRDT
ENSSSCG00000023654
ENSG00000137948
Bromodomain testis associated
Tissue enriched
Detected in many
testis:
97.4
BRF1
ENSSSCG00000031710
ENSG00000185024
BRF1, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BRF2
ENSSSCG00000040833
ENSG00000104221
BRF2, RNA polymerase III transcription initiation factor subunit
Low tissue specificity
Detected in all
BRI3BP
ENSSSCG00000032831
ENSG00000184992
BRI3 binding protein
Tissue enhanced
Detected in all
large intestine:
36.4
BRINP1
ENSSSCG00000005504
ENSG00000078725
BMP/retinoic acid-inducible neural-specific protein 1 precursor
Tissue enriched
Detected in many
brain:
39.1
BRIP1
ENSSSCG00000021384
ENSG00000136492
BRCA1 interacting protein C-terminal helicase 1
Low tissue specificity
Detected in all
BRIX1
ENSSSCG00000016827
ENSG00000113460
Ribosome biogenesis protein BRX1 homolog
Low tissue specificity
Detected in all
BRMS1
ENSSSCG00000012939
ENSG00000174744
Breast cancer metastasis suppressor 1
Low tissue specificity
Detected in all
BRMS1L
ENSSSCG00000001947
ENSG00000100916
Breast cancer metastasis-suppressor 1 like
Low tissue specificity
Detected in all
BROX
ENSSSCG00000010836
ENSG00000162819
BRO1 domain and CAAX motif containing
Low tissue specificity
Detected in all
BRPF1
ENSSSCG00000011548
ENSG00000156983
Bromodomain and PHD finger containing 1
Low tissue specificity
Detected in all
BRPF3
ENSSSCG00000020803
ENSG00000096070
Bromodomain and PHD finger containing 3
Low tissue specificity
Detected in all
BRS3
ENSSSCG00000036703
ENSG00000102239
Bombesin receptor subtype 3
Low tissue specificity
Detected in all
BRSK1
ENSSSCG00000032656
ENSG00000160469
BR serine/threonine kinase 1
Tissue enhanced
Detected in many
brain:
34.5
BRWD1
ENSSSCG00000021042
ENSG00000185658
Proteasome assembly chaperone 1
Tissue enhanced
Detected in all
lens:
98.6
BRWD3
ENSSSCG00000025156
ENSG00000165288
Bromodomain and WD repeat domain containing 3
Low tissue specificity
Detected in all
BSCL2
ENSSSCG00000020823
ENSG00000168000
Seipin isoform 1
Tissue enhanced
Detected in all
testis:
129.5
BSDC1
ENSSSCG00000026392
ENSG00000160058
BSD domain containing 1
Low tissue specificity
Detected in all
BSPRY
ENSSSCG00000021173
ENSG00000119411
B-box and SPRY domain containing
Tissue enhanced
Detected in many
large intestine:
20.8
testis:
29.4
BST1
ENSSSCG00000028359
ENSG00000109743
Bone marrow stromal cell antigen 1
Low tissue specificity
Detected in many
BST2
ENSSSCG00000033453
ENSG00000130303
Bone marrow stromal antigen 2
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
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