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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16026 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ANKRD54
ENSSSCG00000000120
ENSG00000100124
Ankyrin repeat domain 54
Low tissue specificity
Detected in all
ANKRD55
ENSSSCG00000016917
ENSG00000164512
Ankyrin repeat domain 55
Tissue enhanced
Detected in many
male glands:
29.8
salivary gland:
32.9
ANKRD6
ENSSSCG00000004322
ENSG00000135299
Ankyrin repeat domain 6
Low tissue specificity
Detected in all
ANKRD61
ENSSSCG00000007593
ENSG00000157999
Ankyrin repeat domain 61
Tissue enhanced
Detected in all
testis:
24.9
ANKRD66
ENSSSCG00000032691
ENSG00000230062
Ankyrin repeat domain 66
Tissue enhanced
Detected in all
fallopian tube:
28.5
ANKRD7
ENSSSCG00000016623
ENSG00000106013
Ankyrin repeat domain 7
Tissue enriched
Detected in all
testis:
42.1
ANKRD9
ENSSSCG00000039713
ENSG00000156381
Ankyrin repeat domain 9
Tissue enhanced
Detected in many
liver:
24.5
testis:
55.6
ANKS1A
ENSSSCG00000001534
ENSG00000064999
Ankyrin repeat and SAM domain-containing protein 1A
Tissue enriched
Detected in all
kidney:
96.5
ANKS3
ENSSSCG00000007939
ENSG00000168096
Ankyrin repeat and sterile alpha motif domain containing 3
Low tissue specificity
Detected in all
ANKS6
ENSSSCG00000005378
ENSG00000165138
Ankyrin repeat and sterile alpha motif domain containing 6
Low tissue specificity
Detected in many
ANKUB1
ENSSSCG00000011706
ENSG00000206199
Ankyrin repeat and ubiquitin domain containing 1
Tissue enhanced
Detected in many
choroid plexus:
30.8
ANO1
ENSSSCG00000024158
ENSG00000131620
Anoctamin 1
Tissue enhanced
Detected in many
liver:
46.1
male glands:
42.1
ANO10
ENSSSCG00000011296
ENSG00000160746
Anoctamin 10
Low tissue specificity
Detected in all
ANO3
ENSSSCG00000013339
ENSG00000134343
Anoctamin 3
Group enriched
Detected in many
brain:
65.0
ovary:
30.2
ANO5
ENSSSCG00000013344
ENSG00000171714
Anoctamin 5
Group enriched
Detected in many
brain:
22.4
skeletal muscle:
35.7
ANO6
ENSSSCG00000000804
ENSG00000177119
Anoctamin 6
Low tissue specificity
Detected in all
ANO8
ENSSSCG00000039330
ENSG00000074855
Anoctamin 8
Low tissue specificity
Detected in all
ANTXR1
ENSSSCG00000008340
ENSG00000169604
Anthrax toxin receptor 1
Tissue enhanced
Detected in all
cervix:
100.2
ANTXR2
ENSSSCG00000009256
ENSG00000163297
Anthrax toxin receptor 2
Tissue enhanced
Detected in many
cervix:
64.3
smooth muscle:
70.0
ANXA1
ENSSSCG00000005267
ENSG00000135046
Annexin A1
Tissue enhanced
Detected in all
mouth:
174.6
ANXA13
ENSSSCG00000005979
ENSG00000104537
Annexin A13
Group enriched
Detected in all
gallbladder:
60.0
small intestine:
15.8
testis:
21.8
ANXA2
ENSSSCG00000004578
ENSG00000182718
Annexin A2
Low tissue specificity
Detected in all
ANXA4
ENSSSCG00000008336
ENSG00000196975
Annexin A4
Tissue enriched
Detected in many
gallbladder:
149.4
ANXA5
ENSSSCG00000009097
ENSG00000164111
Annexin A5
Low tissue specificity
Detected in all
ANXA6
ENSSSCG00000017089
ENSG00000197043
Annexin A6
Low tissue specificity
Detected in all
ANXA7
ENSSSCG00000010299
ENSG00000138279
Annexin A7
Low tissue specificity
Detected in all
ANXA9
ENSSSCG00000006643
ENSG00000143412
Annexin A9
Low tissue specificity
Detected in all
AOC2
ENSSSCG00000017384
ENSG00000131480
Amine oxidase, copper containing 2
Tissue enriched
Detected in many
cartilage:
19.3
AOX1
ENSSSCG00000029606
ENSG00000138356
Aldehyde oxidase
Tissue enriched
Detected in many
liver:
125.2
AP1B1
ENSSSCG00000009978
ENSG00000100280
Adaptor related protein complex 1 beta 1 subunit
Low tissue specificity
Detected in all
AP1G1
ENSSSCG00000002740
ENSG00000166747
Adaptor related protein complex 1 gamma 1 subunit
Low tissue specificity
Detected in all
AP1G2
ENSSSCG00000002015
ENSG00000213983
Adaptor related protein complex 1 gamma 2 subunit
Low tissue specificity
Detected in all
AP1M1
ENSSSCG00000013856
ENSG00000072958
AP-1 complex subunit mu-1
Tissue enhanced
Detected in all
testis:
85.0
AP1S1
ENSSSCG00000021145
ENSG00000106367
Adaptor related protein complex 1 sigma 1 subunit
Tissue enhanced
Detected in all
brain:
56.0
AP1S2
ENSSSCG00000036074
ENSG00000182287
Adaptor related protein complex 1 sigma 2 subunit
Low tissue specificity
Detected in all
AP1S3
ENSSSCG00000040847
ENSG00000152056
Adaptor related protein complex 1 sigma 3 subunit
Tissue enhanced
Detected in many
male glands:
31.5
AP2A1
ENSSSCG00000003199
ENSG00000196961
Adaptor related protein complex 2 alpha 1 subunit
Low tissue specificity
Detected in all
AP2A2
ENSSSCG00000012836
ENSG00000183020
Adaptor related protein complex 2 alpha 2 subunit
Low tissue specificity
Detected in all
AP2B1
ENSSSCG00000017712
ENSG00000006125
AP-2 complex subunit beta
Tissue enhanced
Detected in all
testis:
64.4
AP2M1
ENSSSCG00000024437
ENSG00000161203
AP-2 complex subunit mu
Low tissue specificity
Detected in all
AP2S1
ENSSSCG00000003106
ENSG00000042753
AP-2 complex subunit sigma isoform 2
Low tissue specificity
Detected in all
AP3B1
ENSSSCG00000014101
ENSG00000132842
AP-3 complex subunit beta-1
Low tissue specificity
Detected in all
AP3B2
ENSSSCG00000001807
ENSG00000103723
Adaptor related protein complex 3 beta 2 subunit
Tissue enhanced
Detected in many
brain:
22.5
pineal gland:
16.2
retina:
13.5
AP3M1
ENSSSCG00000010314
ENSG00000185009
AP-3 complex subunit mu-1
Low tissue specificity
Detected in all
AP3M2
ENSSSCG00000007033
ENSG00000070718
Adaptor related protein complex 3 mu 2 subunit
Tissue enhanced
Detected in all
brain:
20.1
pineal gland:
17.5
AP3S1
ENSSSCG00000037595
ENSG00000177879
Adaptor related protein complex 3 sigma 1 subunit
Low tissue specificity
Detected in all
AP3S2
ENSSSCG00000030174
ENSG00000157823
AP-3 complex subunit sigma-2
Tissue enhanced
Detected in all
lens:
67.4
AP4B1
ENSSSCG00000006762
ENSG00000134262
Adaptor related protein complex 4 beta 1 subunit
Low tissue specificity
Detected in all
AP4E1
ENSSSCG00000004634
ENSG00000081014
Adaptor related protein complex 4 epsilon 1 subunit
Low tissue specificity
Detected in all
AP4M1
ENSSSCG00000034288
ENSG00000221838
Adaptor related protein complex 4 mu 1 subunit
Low tissue specificity
Detected in all
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