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Human disease related genes
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15498 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
INTU
ENSSSCG00000009079
ENSG00000164066
Inturned planar cell polarity protein
Tissue enhanced
Detected in many
choroid plexus:
20.6
INVS
ENSSSCG00000005388
ENSG00000119509
Inversin
Low tissue specificity
Detected in all
IP6K1
ENSSSCG00000011390
ENSG00000176095
Inositol hexakisphosphate kinase 1
Low tissue specificity
Detected in all
IP6K2
ENSSSCG00000040922
ENSG00000068745
Inositol hexakisphosphate kinase 2
Low tissue specificity
Detected in all
IPMK
ENSSSCG00000040863
ENSG00000151151
Inositol polyphosphate multikinase
Tissue enhanced
Detected in all
testis:
36.3
IPO11
ENSSSCG00000016938
ENSG00000086200
Importin 11
Low tissue specificity
Detected in all
IPO13
ENSSSCG00000029430
ENSG00000117408
Importin 13
Tissue enhanced
Detected in all
skeletal muscle:
62.6
IPO4
ENSSSCG00000002000
ENSG00000196497
Importin 4
Low tissue specificity
Detected in all
IPO5
ENSSSCG00000009509
ENSG00000065150
Importin-5
Tissue enhanced
Detected in all
lens:
96.8
testis:
62.7
IPO7
ENSSSCG00000028886
ENSG00000205339
Importin 7
Low tissue specificity
Detected in all
IPO8
ENSSSCG00000000534
ENSG00000133704
Importin 8
Tissue enriched
Detected in all
lens:
78.3
IPO9
ENSSSCG00000039843
ENSG00000198700
Importin 9
Low tissue specificity
Detected in all
IPP
ENSSSCG00000040796
ENSG00000197429
Intracisternal A particle-promoted polypeptide
Low tissue specificity
Detected in all
IPPK
ENSSSCG00000030204
ENSG00000127080
Inositol-pentakisphosphate 2-kinase
Low tissue specificity
Detected in all
IQANK1
ENSSSCG00000034987
ENSG00000203499
IQ motif and ankyrin repeat containing 1
Tissue enhanced
Detected in many
cartilage:
18.5
epididymis:
14.0
IQCB1
ENSSSCG00000011881
ENSG00000173226
IQ motif containing B1
Low tissue specificity
Detected in all
IQCC
ENSSSCG00000003610
ENSG00000160051
IQ motif containing C
Low tissue specificity
Detected in all
IQCD
ENSSSCG00000009877
ENSG00000166578
IQ motif containing D
Tissue enhanced
Detected in many
fallopian tube:
17.0
testis:
31.3
upper respiratory system:
27.7
IQCE
ENSSSCG00000007568
ENSG00000106012
IQ motif containing E
Tissue enhanced
Detected in all
testis:
75.9
IQCF1
ENSSSCG00000029827
ENSG00000173389
IQ motif containing F1
Tissue enriched
Detected in many
testis:
75.6
IQCF5
ENSSSCG00000033277
ENSG00000214681
IQ motif containing F5
Tissue enhanced
Detected in all
testis:
38.7
IQCK
ENSSSCG00000034720
ENSG00000174628
IQ motif containing K
Tissue enhanced
Detected in many
lens:
35.0
testis:
23.6
IQGAP1
ENSSSCG00000001814
ENSG00000140575
IQ motif containing GTPase activating protein 1
Low tissue specificity
Detected in all
IQGAP2
ENSSSCG00000014088
ENSG00000145703
IQ motif containing GTPase activating protein 2
Low tissue specificity
Detected in many
IQGAP3
ENSSSCG00000006475
ENSG00000183856
IQ motif containing GTPase activating protein 3
Tissue enhanced
Detected in many
epididymis:
16.8
IQSEC1
ENSSSCG00000027812
ENSG00000144711
IQ motif and Sec7 domain 1
Tissue enhanced
Detected in all
cartilage:
88.9
IQSEC2
ENSSSCG00000012324
ENSG00000124313
IQ motif and Sec7 domain 2
Tissue enhanced
Detected in many
brain:
31.6
IQUB
ENSSSCG00000016608
ENSG00000164675
IQ motif and ubiquitin domain containing
Tissue enhanced
Detected in many
fallopian tube:
42.3
testis:
27.4
IRAK1
ENSSSCG00000012795
ENSG00000184216
Interleukin 1 receptor associated kinase 1
Low tissue specificity
Detected in all
IRAK1BP1
ENSSSCG00000004472
ENSG00000146243
Interleukin 1 receptor associated kinase 1 binding protein 1
Tissue enhanced
Detected in many
testis:
21.1
IRAK2
ENSSSCG00000011570
ENSG00000134070
Interleukin 1 receptor associated kinase 2
Low tissue specificity
Detected in many
IRAK3
ENSSSCG00000000475
ENSG00000090376
Interleukin 1 receptor associated kinase 3
Low tissue specificity
Detected in all
IRAK4
ENSSSCG00000000799
ENSG00000198001
Interleukin-1 receptor-associated kinase 4
Low tissue specificity
Detected in all
IREB2
ENSSSCG00000001756
ENSG00000136381
Iron-responsive element-binding protein 2
Low tissue specificity
Detected in all
IRF1
ENSSSCG00000014277
ENSG00000125347
Interferon regulatory factor 1
Low tissue specificity
Detected in all
IRF2
ENSSSCG00000015782
ENSG00000168310
Interferon regulatory factor 2
Low tissue specificity
Detected in all
IRF2BP1
ENSSSCG00000003091
ENSG00000170604
Interferon regulatory factor 2 binding protein 1
Low tissue specificity
Detected in all
IRF2BP2
ENSSSCG00000038132
ENSG00000168264
Interferon regulatory factor 2 binding protein 2
Low tissue specificity
Detected in all
IRF2BPL
ENSSSCG00000002392
ENSG00000119669
Interferon regulatory factor 2 binding protein like
Low tissue specificity
Detected in all
IRF3
ENSSSCG00000003178
ENSG00000126456
Interferon regulatory factor 3
Low tissue specificity
Detected in all
IRF4
ENSSSCG00000033381
ENSG00000137265
Interferon regulatory factor 4
Tissue enhanced
Detected in many
lymphoid tissue:
22.8
stomach:
31.3
upper respiratory system:
34.8
IRF5
ENSSSCG00000016573
ENSG00000128604
Interferon regulatory factor 5
Tissue enhanced
Detected in many
lymphoid tissue:
37.5
IRF6
ENSSSCG00000015612
ENSG00000117595
Interferon regulatory factor 6
Low tissue specificity
Detected in all
IRF7
ENSSSCG00000012853
ENSG00000185507
Interferon regulatory factor 7
Tissue enhanced
Detected in many
small intestine:
36.4
IRF8
ENSSSCG00000034980
ENSG00000140968
Interferon regulatory factor 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.4
stomach:
28.9
IRF9
ENSSSCG00000002002
ENSG00000213928
Interferon regulatory factor 9
Low tissue specificity
Detected in many
IRGC
ENSSSCG00000003066
ENSG00000124449
Interferon-inducible GTPase 5
Tissue enriched
Detected in some
testis:
130.9
IRGQ
ENSSSCG00000030637
ENSG00000167378
Immunity related GTPase Q
Low tissue specificity
Detected in all
IRS1
ENSSSCG00000025729
ENSG00000169047
Insulin receptor substrate 1
Tissue enhanced
Detected in all
skeletal muscle:
58.0
IRS2
ENSSSCG00000034763
ENSG00000185950
Insulin receptor substrate 2
Tissue enhanced
Detected in all
adipose tissue:
60.9
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