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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15498 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ADAT3
ENSSSCG00000038810
ENSG00000213638
Adenosine deaminase, tRNA specific 3
Low tissue specificity
Detected in all
ADCK1
ENSSSCG00000002408
ENSG00000063761
AarF domain containing kinase 1
Low tissue specificity
Detected in all
ADCK2
ENSSSCG00000016496
ENSG00000133597
AarF domain containing kinase 2
Low tissue specificity
Detected in all
ADCK5
ENSSSCG00000005907
ENSG00000173137
AarF domain containing kinase 5
Tissue enhanced
Detected in all
epididymis:
47.5
ADCY2
ENSSSCG00000017101
ENSG00000078295
Adenylate cyclase 2
Tissue enhanced
Detected in many
brain:
39.7
skeletal muscle:
38.1
ADCY3
ENSSSCG00000008578
ENSG00000138031
Adenylate cyclase 3
Tissue enhanced
Detected in all
ovary:
38.6
ADCY4
ENSSSCG00000001988
ENSG00000129467
Adenylate cyclase 4
Tissue enhanced
Detected in many
lymphoid tissue:
44.9
ADCY6
ENSSSCG00000000175
ENSG00000174233
Adenylate cyclase 6
Tissue enhanced
Detected in all
heart:
76.9
ADCY7
ENSSSCG00000039408
ENSG00000121281
Adenylate cyclase 7
Tissue enhanced
Detected in many
lymphoid tissue:
48.3
ADCY8
ENSSSCG00000031717
ENSG00000155897
Adenylate cyclase 8
Tissue enhanced
Detected in all
upper respiratory system:
30.9
ADCY9
ENSSSCG00000007950
ENSG00000162104
Adenylate cyclase 9
Low tissue specificity
Detected in all
ADCYAP1R1
ENSSSCG00000016672
ENSG00000078549
Pituitary adenylate cyclase-activating polypeptide type I receptor precursor
Group enriched
Detected in many
brain:
32.6
choroid plexus:
19.4
heart:
36.6
male glands:
36.8
ADD1
ENSSSCG00000008692
ENSG00000087274
Adducin 1
Low tissue specificity
Detected in all
ADD3
ENSSSCG00000010621
ENSG00000148700
Adducin 3
Low tissue specificity
Detected in all
ADGRA1
ENSSSCG00000039199
ENSG00000197177
Adhesion G protein-coupled receptor A1
Tissue enhanced
Detected in many
male glands:
31.0
ADGRA2
ENSSSCG00000015825
ENSG00000020181
Adhesion G protein-coupled receptor A2
Low tissue specificity
Detected in all
ADGRA3
ENSSSCG00000008753
ENSG00000152990
Adhesion G protein-coupled receptor A3
Tissue enhanced
Detected in all
cartilage:
76.4
ADGRB2
ENSSSCG00000003604
ENSG00000121753
Adhesion G protein-coupled receptor B2
Tissue enriched
Detected in many
brain:
31.1
ADGRD1
ENSSSCG00000009745
ENSG00000111452
Adhesion G protein-coupled receptor D1
Tissue enhanced
Detected in many
mesothelial tissue:
53.9
ADGRE5
ENSSSCG00000013775
ENSG00000123146
Adhesion G protein-coupled receptor E5
Low tissue specificity
Detected in many
ADGRF1
ENSSSCG00000001726
ENSG00000153292
Adhesion G-protein coupled receptor F1 precursor
Tissue enhanced
Detected in all
male glands:
54.4
ADGRF2
ENSSSCG00000023591
ENSG00000164393
Adhesion G protein-coupled receptor F2
Low tissue specificity
Detected in all
ADGRF3
ENSSSCG00000008570
ENSG00000173567
Adhesion G protein-coupled receptor F3
Low tissue specificity
Detected in many
ADGRG1
ENSSSCG00000002815
ENSG00000205336
Adhesion G-protein coupled receptor G1 precursor
Low tissue specificity
Detected in all
ADGRG2
ENSSSCG00000029756
ENSG00000173698
Adhesion G protein-coupled receptor G2
Tissue enriched
Detected in many
cartilage:
61.9
ADGRG3
ENSSSCG00000002814
ENSG00000182885
Adhesion G protein-coupled receptor G3
Low tissue specificity
Detected in all
ADGRG5
ENSSSCG00000025503
ENSG00000159618
Adhesion G protein-coupled receptor G5
Tissue enhanced
Detected in many
lymphoid tissue:
25.7
stomach:
22.1
ADGRG6
ENSSSCG00000004139
ENSG00000112414
Adhesion G protein-coupled receptor G6
Tissue enriched
Detected in many
cartilage:
97.1
ADGRL1
ENSSSCG00000013773
ENSG00000072071
Adhesion G protein-coupled receptor L1
Tissue enhanced
Detected in all
smooth muscle:
64.6
ADGRL2
ENSSSCG00000003761
ENSG00000117114
Adhesion G protein-coupled receptor L2
Low tissue specificity
Detected in all
ADGRL3
ENSSSCG00000026129
ENSG00000150471
Adhesion G protein-coupled receptor L3
Tissue enhanced
Detected in many
brain:
28.5
pineal gland:
20.4
ADGRL4
ENSSSCG00000003762
ENSG00000162618
Adhesion G protein-coupled receptor L4
Low tissue specificity
Detected in many
ADH1C
ENSSSCG00000009182
Alcohol dehydrogenase 1C (class I), gamma polypeptide
Tissue enhanced
Detected in all
liver:
131.8
ADH5
ENSSSCG00000009185
ENSG00000197894
Alcohol dehydrogenase class-3
Low tissue specificity
Detected in all
ADHFE1
ENSSSCG00000006213
ENSG00000147576
Alcohol dehydrogenase, iron containing 1
Tissue enhanced
Detected in all
kidney:
35.5
ADI1
ENSSSCG00000029161
ENSG00000182551
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Tissue enhanced
Detected in all
male glands:
66.8
ADIG
ENSSSCG00000007346
ENSG00000182035
Adipogenin
Tissue enhanced
Detected in many
adipose tissue:
67.8
bone marrow:
38.6
testis:
34.1
ADIPOQ
ENSSSCG00000039103
ENSG00000181092
Adiponectin precursor
Group enriched
Detected in many
adipose tissue:
213.0
aorta:
64.3
bone marrow:
147.9
ADIPOR2
ENSSSCG00000000757
ENSG00000006831
Adiponectin receptor protein 2
Tissue enhanced
Detected in all
adipose tissue:
72.1
bone marrow:
55.2
ADIRF
ENSSSCG00000037918
ENSG00000148671
Adipogenesis regulatory factor
Group enriched
Detected in many
adipose tissue:
186.4
cornea:
417.2
penis:
193.0
ADK
ENSSSCG00000010315
ENSG00000156110
Adenosine kinase
Tissue enhanced
Detected in all
liver:
37.5
ADM
ENSSSCG00000013408
ENSG00000148926
ADM Adrenomedullin Proadrenomedullin N-20 terminal peptide
Tissue enhanced
Detected in many
aorta:
30.1
cartilage:
36.0
ADM5
ENSSSCG00000032629
ADM5 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
22.4
ADNP
ENSSSCG00000007473
ENSG00000101126
Activity-dependent neuroprotector homeobox protein
Low tissue specificity
Detected in all
ADNP2
ENSSSCG00000038632
ENSG00000101544
ADNP homeobox 2
Low tissue specificity
Detected in all
ADO
ENSSSCG00000031360
ENSG00000181915
2-aminoethanethiol dioxygenase
Low tissue specificity
Detected in all
ADORA2B
ENSSSCG00000035051
ENSG00000170425
Adenosine A2b receptor
Tissue enhanced
Detected in all
upper respiratory system:
25.5
ADPGK
ENSSSCG00000001925
ENSG00000159322
ADP dependent glucokinase
Low tissue specificity
Detected in all
ADPRH
ENSSSCG00000011896
ENSG00000144843
ADP-ribosylarginine hydrolase
Low tissue specificity
Detected in all
ADPRHL2
ENSSSCG00000003634
ENSG00000116863
ADP-ribosylhydrolase like 2
Low tissue specificity
Detected in all
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