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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
IDO2
ENSSSCG00000023054
ENSG00000188676
Indoleamine 2,3-dioxygenase 2
Group enriched
Detected in many
kidney:
25.2
liver:
48.2
upper respiratory system:
14.4
IDUA
ENSSSCG00000032262
ENSG00000127415
Iduronidase, alpha-L-
Low tissue specificity
Detected in all
IER2
ENSSSCG00000013753
ENSG00000160888
Immediate early response 2
Low tissue specificity
Detected in many
IER3
ENSSSCG00000027607
ENSG00000137331
Immediate early response 3
Tissue enhanced
Detected in many
cartilage:
140.2
IER5
ENSSSCG00000015541
ENSG00000162783
Immediate early response gene 5 protein
Low tissue specificity
Detected in all
IER5L
ENSSSCG00000005673
ENSG00000188483
Immediate early response 5 like
Low tissue specificity
Detected in many
IFFO1
ENSSSCG00000000695
ENSG00000010295
Intermediate filament family orphan 1
Low tissue specificity
Detected in all
IFI27L2
ENSSSCG00000002472
ENSG00000119632
Interferon alpha inducible protein 27 like 2
Low tissue specificity
Detected in all
IFI30
ENSSSCG00000013901
ENSG00000216490
Gamma-interferon-inducible-lysosomal thiol reductase
Tissue enhanced
Detected in many
lymphoid tissue:
50.2
ovary:
51.3
IFI35
ENSSSCG00000029763
ENSG00000068079
Interferon induced protein 35
Low tissue specificity
Detected in all
IFI44
ENSSSCG00000003763
ENSG00000137965
Interferon-induced protein 44
Low tissue specificity
Detected in many
IFI44L
ENSSSCG00000027660
ENSG00000137959
Interferon induced protein 44 like
Low tissue specificity
Detected in all
IFI6
ENSSSCG00000034570
ENSG00000126709
Interferon alpha inducible protein 6
Tissue enhanced
Detected in many
liver:
106.7
IFIH1
ENSSSCG00000015897
ENSG00000115267
Interferon-induced helicase C domain-containing protein 1
Low tissue specificity
Detected in all
IFIT1
ENSSSCG00000010452
ENSG00000119917
Interferon-induced protein with tetratricopeptide repeats 1
Low tissue specificity
Detected in all
IFIT2
ENSSSCG00000010451
ENSG00000119922
Interferon-induced protein with tetratricopeptide repeats 2
Low tissue specificity
Detected in all
IFIT5
ENSSSCG00000010454
ENSG00000152778
Interferon-induced protein with tetratricopeptide repeats 5
Low tissue specificity
Detected in all
IFITM3
ENSSSCG00000038912
Interferon-induced transmembrane protein 3
Low tissue specificity
Detected in many
IFITM5
ENSSSCG00000040278
ENSG00000206013
Interferon induced transmembrane protein 5
Tissue enhanced
Detected in many
brain:
21.2
testis:
14.1
IFN-ALPHA-1
ENSSSCG00000039164
Interferon-alpha-1 precursor
Tissue enhanced
Detected in many
salivary gland:
19.1
IFN-ALPHA-14
ENSSSCG00000034088
Interferon-alpha-14 precursor
Low tissue specificity
Detected in many
IFN-ALPHA-15
ENSSSCG00000031149
Uncharacterized protein LOC100152504 precursor
Tissue enhanced
Detected in all
fallopian tube:
46.6
IFN-ALPHA-16
ENSSSCG00000039065
Uncharacterized protein LOC100157735 precursor
Tissue enhanced
Detected in many
fallopian tube:
24.4
IFN-ALPHA-4
ENSSSCG00000032868
Interferon-alpha-4 precursor
Tissue enhanced
Detected in many
choroid plexus:
13.9
IFN-ALPHA-8
ENSSSCG00000037624
Sus scrofa interferon, alpha 5 (IFN-ALPHA-5), mRNA.
Low tissue specificity
Detected in many
IFN-ALPHA-9
ENSSSCG00000036535
Uncharacterized protein LOC100157766 precursor
Tissue enhanced
Detected in many
fallopian tube:
11.6
IFN-DELTA-1
ENSSSCG00000005152
Sus scrofa interferon-delta-2 (IFN-DELTA-2), mRNA.
Low tissue specificity
Detected in all
IFN-DELTA-11
ENSSSCG00000040246
Uncharacterized protein LOC100155754 precursor
Low tissue specificity
Detected in many
IFN-DELTA-3
ENSSSCG00000037750
Uncharacterized protein LOC100156558 precursor
Tissue enhanced
Detected in many
choroid plexus:
20.4
IFN-DELTA-4
ENSSSCG00000038862
Uncharacterized protein LOC100152899 precursor
Tissue enhanced
Detected in many
choroid plexus:
29.0
fallopian tube:
37.7
IFN-DELTA-5
ENSSSCG00000032099
Uncharacterized protein LOC100156933 precursor
Tissue enhanced
Detected in many
choroid plexus:
10.3
IFN-DELTA-6
ENSSSCG00000036510
Interferon-delta-6 precursor
Tissue enhanced
Detected in many
choroid plexus:
22.6
IFN-DELTA-7
ENSSSCG00000031022
Interferon delta 7 precursor
Group enriched
Detected in some
choroid plexus:
15.1
fallopian tube:
7.0
lung:
5.8
upper respiratory system:
4.2
IFN-DELTA-8
ENSSSCG00000039759
Uncharacterized protein LOC100153693 precursor
Tissue enhanced
Detected in many
thyroid gland:
22.6
IFN-OMEGA-2
ENSSSCG00000033910
Interferon-omega-2
Low tissue specificity
Detected in many
IFN-OMEGA-3
ENSSSCG00000040502
Interferon omega 3 precursor
Tissue enhanced
Detected in many
cartilage:
16.6
IFN-OMEGA-4
ENSSSCG00000031850
Sus scrofa interferon omega 5 (LOC100157354), mRNA.
Tissue enhanced
Detected in many
cartilage:
25.9
IFN-OMEGA-6
ENSSSCG00000032368
Interferon omega 6 precursor
Tissue enhanced
Detected in all
fallopian tube:
36.8
IFN-OMEGA-7
ENSSSCG00000040054
Inferferon omega 7 precursor
Low tissue specificity
Detected in many
IFNA1
ENSSSCG00000037818
Interferon alpha-1 precursor
Tissue enhanced
Detected in many
choroid plexus:
18.8
fallopian tube:
15.1
IFNAR1
ENSSSCG00000033115
ENSG00000142166
Interferon alpha/beta receptor 1 precursor
Low tissue specificity
Detected in all
IFNE
ENSSSCG00000005136
ENSG00000184995
Interferon epsilon
Tissue enhanced
Detected in many
skin:
31.1
thyroid gland:
27.4
IFNG
ENSSSCG00000032963
ENSG00000111537
Interferon gamma
Low tissue specificity
Detected in many
IFNGR1
ENSSSCG00000004156
ENSG00000027697
Interferon gamma receptor 1 precursor
Low tissue specificity
Detected in all
IFNGR2
ENSSSCG00000034378
ENSG00000159128
Interferon gamma receptor 2 precursor
Low tissue specificity
Detected in all
IFNLR1
ENSSSCG00000032860
ENSG00000185436
Interferon lambda receptor 1
Tissue enhanced
Detected in all
liver:
21.9
IFRD1
ENSSSCG00000016646
ENSG00000006652
Interferon-related developmental regulator 1
Low tissue specificity
Detected in all
IFT122
ENSSSCG00000011589
ENSG00000163913
Intraflagellar transport 122
Low tissue specificity
Detected in all
IFT140
ENSSSCG00000008020
ENSG00000187535
Intraflagellar transport 140
Low tissue specificity
Detected in all
IFT172
ENSSSCG00000026367
ENSG00000138002
Intraflagellar transport 172
Low tissue specificity
Detected in all
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