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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
H1F0
ENSSSCG00000039348
ENSG00000189060
H1 histone family member 0
Low tissue specificity
Detected in all
H1FOO
ENSSSCG00000011591
ENSG00000178804
Histone H1oo
Low tissue specificity
Detected in all
H1FX
ENSSSCG00000011613
ENSG00000184897
H1 histone family member X
Low tissue specificity
Detected in all
H2AFJ
ENSSSCG00000039307
ENSG00000246705
H2A histone family member J
Low tissue specificity
Detected in all
H2AFV
ENSSSCG00000016738
ENSG00000105968
H2A histone family member V
Low tissue specificity
Detected in all
H2AFY
ENSSSCG00000014307
ENSG00000113648
Core histone macro-H2A.1 isoform 1
Low tissue specificity
Detected in all
H2AFY2
ENSSSCG00000031713
ENSG00000099284
H2A histone family member Y2
Tissue enhanced
Detected in many
pituitary gland:
15.8
thyroid gland:
21.5
H2AFZ
ENSSSCG00000009178
Histone H2A.Z
Tissue enhanced
Detected in all
male glands:
42.6
H3F3A
ENSSSCG00000023971
ENSG00000163041
Histone H3.3
Low tissue specificity
Detected in all
H6PD
ENSSSCG00000034502
ENSG00000049239
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase
Low tissue specificity
Detected in all
HAAO
ENSSSCG00000038660
ENSG00000162882
3-hydroxyanthranilate 3,4-dioxygenase
Group enriched
Detected in many
kidney:
43.2
liver:
112.9
HABP4
ENSSSCG00000035956
ENSG00000130956
Intracellular hyaluronan-binding protein 4
Tissue enhanced
Detected in all
testis:
42.0
HACD1
ENSSSCG00000038007
ENSG00000165996
3-hydroxyacyl-CoA dehydratase 1
Low tissue specificity
Detected in all
HACD2
ENSSSCG00000034786
ENSG00000206527
3-hydroxyacyl-CoA dehydratase 2
Tissue enhanced
Detected in all
adipose tissue:
52.3
HACD3
ENSSSCG00000004935
ENSG00000074696
3-hydroxyacyl-CoA dehydratase 3
Tissue enhanced
Detected in all
male glands:
56.2
HACD4
ENSSSCG00000005164
ENSG00000188921
3-hydroxyacyl-CoA dehydratase 4
Low tissue specificity
Detected in all
HACE1
ENSSSCG00000004364
ENSG00000085382
E3 ubiquitin-protein ligase HACE1
Low tissue specificity
Detected in all
HACL1
ENSSSCG00000011192
ENSG00000131373
2-hydroxyacyl-CoA lyase 1
Low tissue specificity
Detected in all
HADH
ENSSSCG00000009150
ENSG00000138796
Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial
Low tissue specificity
Detected in all
HADHA
ENSSSCG00000008571
ENSG00000084754
Trifunctional enzyme subunit alpha, mitochondrial Long-chain enoyl-CoA hydratase Long chain 3-hydroxyacyl-CoA dehydrogenase
Low tissue specificity
Detected in all
HADHB
ENSSSCG00000008569
ENSG00000138029
Tissue enhanced
Detected in all
heart:
90.4
HAGH
ENSSSCG00000008012
ENSG00000063854
Hydroxyacylglutathione hydrolase
Tissue enhanced
Detected in all
testis:
92.8
HAGHL
ENSSSCG00000008003
ENSG00000103253
Hydroxyacylglutathione hydrolase like
Tissue enhanced
Detected in many
male glands:
18.4
HAL
ENSSSCG00000000892
ENSG00000084110
Histidine ammonia-lyase
Tissue enriched
Detected in all
liver:
49.8
HAND1
ENSSSCG00000031080
ENSG00000113196
Heart- and neural crest derivatives-expressed protein 1
Tissue enhanced
Detected in some
heart:
10.2
small intestine:
11.4
smooth muscle:
46.6
urinary bladder:
19.1
HAO2
ENSSSCG00000006720
ENSG00000116882
Hydroxyacid oxidase 2
Group enriched
Detected in all
kidney:
103.3
liver:
62.4
HAPLN2
ENSSSCG00000006478
ENSG00000132702
Hyaluronan and proteoglycan link protein 2
Tissue enriched
Detected in all
brain:
73.3
HAPLN3
ENSSSCG00000030597
ENSG00000140511
Hyaluronan and proteoglycan link protein 3
Tissue enhanced
Detected in all
cartilage:
62.0
liver:
34.6
HARBI1
ENSSSCG00000013258
ENSG00000180423
Harbinger transposase derived 1
Low tissue specificity
Detected in all
HARS
ENSSSCG00000014375
ENSG00000170445
Histidyl-tRNA synthetase
Low tissue specificity
Detected in all
HARS2
ENSSSCG00000014376
ENSG00000112855
Histidyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
HAS1
ENSSSCG00000003239
ENSG00000105509
Hyaluronan synthase 1
Tissue enhanced
Detected in many
male glands:
40.1
HAS3
ENSSSCG00000035601
ENSG00000103044
Hyaluronan synthase 3
Tissue enhanced
Detected in all
male glands:
26.4
HASPIN
ENSSSCG00000031821
ENSG00000177602
Histone H3 associated protein kinase
Tissue enriched
Detected in many
testis:
73.8
HAT1
ENSSSCG00000015952
ENSG00000128708
Histone acetyltransferase 1
Low tissue specificity
Detected in all
HAUS1
ENSSSCG00000004498
ENSG00000152240
HAUS augmin-like complex subunit 1
Low tissue specificity
Detected in all
HAUS2
ENSSSCG00000035719
ENSG00000137814
HAUS augmin-like complex subunit 2
Low tissue specificity
Detected in all
HAUS5
ENSSSCG00000002904
ENSG00000249115
HAUS augmin like complex subunit 5
Low tissue specificity
Detected in all
HAUS6
ENSSSCG00000005173
ENSG00000147874
HAUS augmin like complex subunit 6
Low tissue specificity
Detected in all
HAUS8
ENSSSCG00000036584
ENSG00000131351
HAUS augmin like complex subunit 8
Low tissue specificity
Detected in all
HAVCR2
ENSSSCG00000028875
ENSG00000135077
Hepatitis A virus cellular receptor 2
Low tissue specificity
Detected in all
HAX1
ENSSSCG00000006552
ENSG00000143575
HCLS1 associated protein X-1
Low tissue specificity
Detected in all
HBE1
ENSSSCG00000014726
ENSG00000213931
Hemoglobin subunit epsilon
Tissue enriched
Detected in some
epididymis:
20.7
HBEGF
ENSSSCG00000014362
ENSG00000113070
Proheparin-binding EGF-like growth factor Heparin-binding EGF-like growth factor
Tissue enhanced
Detected in all
cartilage:
33.7
synovial tissue:
78.6
HBP1
ENSSSCG00000035673
ENSG00000105856
HMG box-containing protein 1
Low tissue specificity
Detected in all
HBQ1
ENSSSCG00000038804
ENSG00000086506
Hemoglobin subunit theta 1
Low tissue specificity
Detected in many
HBS1L
ENSSSCG00000004169
ENSG00000112339
HBS1 like translational GTPase
Low tissue specificity
Detected in all
HCCS
ENSSSCG00000012111
ENSG00000004961
Holocytochrome c synthase
Low tissue specificity
Detected in all
HCFC1
ENSSSCG00000012793
ENSG00000172534
Host cell factor C1
Low tissue specificity
Detected in all
HCFC1R1
ENSSSCG00000027252
ENSG00000103145
Host cell factor C1 regulator 1
Low tissue specificity
Detected in all
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