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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GFOD1
ENSSSCG00000035867
ENSG00000145990
Glucose-fructose oxidoreductase domain containing 1
Tissue enhanced
Detected in all
brain:
24.2
GFOD2
ENSSSCG00000024750
ENSG00000141098
Glucose-fructose oxidoreductase domain containing 2
Low tissue specificity
Detected in all
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GFPT2
ENSSSCG00000014012
ENSG00000131459
Glutamine-fructose-6-phosphate transaminase 2
Tissue enhanced
Detected in many
cartilage:
41.9
ovary:
57.7
synovial tissue:
75.8
GFRA1
ENSSSCG00000010655
ENSG00000151892
GDNF family receptor alpha 1
Low tissue specificity
Detected in many
GFRA2
ENSSSCG00000009605
ENSG00000168546
GDNF family receptor alpha 2
Tissue enhanced
Detected in many
brain:
22.6
breast:
12.9
GFRA4
ENSSSCG00000021401
ENSG00000125861
GDNF family receptor alpha 4
Tissue enhanced
Detected in many
mesothelial tissue:
31.0
thyroid gland:
47.1
GGA1
ENSSSCG00000024895
ENSG00000100083
Golgi associated, gamma adaptin ear containing, ARF binding protein 1
Low tissue specificity
Detected in all
GGA2
ENSSSCG00000010798
ENSG00000103365
Golgi associated, gamma adaptin ear containing, ARF binding protein 2
Low tissue specificity
Detected in all
GGA3
ENSSSCG00000017211
ENSG00000125447
Golgi associated, gamma adaptin ear containing, ARF binding protein 3
Low tissue specificity
Detected in all
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
GGCX
ENSSSCG00000027381
ENSG00000115486
Gamma-glutamyl carboxylase
Low tissue specificity
Detected in all
GGH
ENSSSCG00000037637
ENSG00000137563
Gamma-glutamyl hydrolase
Tissue enhanced
Detected in all
liver:
68.0
GGNBP2
ENSSSCG00000017688
ENSG00000278311
Gametogenetin binding protein 2
Low tissue specificity
Detected in all
GGPS1
ENSSSCG00000031680
ENSG00000152904
Geranylgeranyl diphosphate synthase 1
Low tissue specificity
Detected in all
GGT5
ENSSSCG00000010055
ENSG00000099998
Gamma-glutamyltransferase 5
Low tissue specificity
Detected in all
GGT6
ENSSSCG00000017883
ENSG00000167741
Gamma-glutamyltransferase 6
Tissue enhanced
Detected in all
cornea:
28.9
GGT7
ENSSSCG00000007285
ENSG00000131067
Gamma-glutamyltransferase 7
Low tissue specificity
Detected in all
GHDC
ENSSSCG00000017407
ENSG00000167925
GH3 domain-containing protein precursor
Low tissue specificity
Detected in all
GHITM
ENSSSCG00000010345
ENSG00000165678
Growth hormone-inducible transmembrane protein
Tissue enhanced
Detected in all
pineal gland:
59.4
GHR
ENSSSCG00000016866
ENSG00000112964
Growth hormone receptor precursor
Tissue enhanced
Detected in many
adipose tissue:
57.2
bone marrow:
51.3
liver:
42.1
GHRH
ENSSSCG00000007332
ENSG00000118702
Somatoliberin precursor
Tissue enhanced
Detected in many
brain:
11.2
GHSR
ENSSSCG00000011754
ENSG00000121853
Growth hormone secretagogue receptor type 1
Low tissue specificity
Detected in all
GID4
ENSSSCG00000037336
ENSG00000141034
GID complex subunit 4 homolog
Low tissue specificity
Detected in all
GID8
ENSSSCG00000034173
ENSG00000101193
GID complex subunit 8 homolog
Low tissue specificity
Detected in all
GIF
ENSSSCG00000013117
ENSG00000134812
Gastric intrinsic factor
Tissue enhanced
Detected in all
small intestine:
65.4
stomach:
26.7
GIGYF1
ENSSSCG00000007668
ENSG00000146830
GRB10 interacting GYF protein 1
Low tissue specificity
Detected in all
GIGYF2
ENSSSCG00000016291
ENSG00000204120
GRB10 interacting GYF protein 2
Low tissue specificity
Detected in all
GIMAP8
ENSSSCG00000016452
ENSG00000171115
GTPase, IMAP family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
34.0
GIMD1
ENSSSCG00000039563
ENSG00000250298
GIMAP family P-loop NTPase domain containing 1
Low tissue specificity
Detected in all
GIN1
ENSSSCG00000025287
ENSG00000145723
Gypsy retrotransposon integrase 1
Low tissue specificity
Detected in all
GINM1
ENSSSCG00000030067
ENSG00000055211
Glycoprotein integral membrane 1
Tissue enhanced
Detected in all
male glands:
74.3
GINS2
ENSSSCG00000040386
ENSG00000131153
GINS complex subunit 2
Group enriched
Detected in all
lymphoid tissue:
44.7
stomach:
11.6
GINS3
ENSSSCG00000002802
ENSG00000181938
DNA replication complex GINS protein PSF3
Low tissue specificity
Detected in many
GINS4
ENSSSCG00000037513
ENSG00000147536
GINS complex subunit 4
Low tissue specificity
Detected in all
GIP
ENSSSCG00000026330
ENSG00000159224
Gastric inhibitory polypeptide precursor
Low tissue specificity
Detected in all
GIPC1
ENSSSCG00000032842
ENSG00000123159
GIPC PDZ domain containing family member 1
Tissue enhanced
Detected in many
stomach:
33.4
GIPC2
ENSSSCG00000035582
ENSG00000137960
GIPC PDZ domain containing family member 2
Low tissue specificity
Detected in all
GIPC3
ENSSSCG00000036190
ENSG00000179855
GIPC PDZ domain containing family member 3
Tissue enhanced
Detected in many
lymphoid tissue:
24.7
GIT1
ENSSSCG00000017787
ENSG00000108262
GIT ArfGAP 1
Tissue enhanced
Detected in all
testis:
94.4
GIT2
ENSSSCG00000009925
ENSG00000139436
GIT ArfGAP 2
Low tissue specificity
Detected in all
GJA1
ENSSSCG00000004241
ENSG00000152661
Gap junction alpha-1 protein
Tissue enhanced
Detected in many
skin:
144.1
GJA10
ENSSSCG00000004330
ENSG00000135355
Gap junction alpha-10 protein
Tissue enhanced
Detected in many
epididymis:
9.3
GJA4
ENSSSCG00000039983
ENSG00000187513
Gap junction alpha-4 protein
Tissue enhanced
Detected in many
aorta:
31.8
mesothelial tissue:
39.2
GJA5
ENSSSCG00000006696
ENSG00000265107
Gap junction protein alpha 5
Low tissue specificity
Detected in many
GJA9
ENSSSCG00000003650
ENSG00000131233
Gap junction protein alpha 9
Tissue enhanced
Detected in all
brain:
26.8
GJB1
ENSSSCG00000012394
ENSG00000169562
Gap junction protein beta 1
Tissue enhanced
Detected in many
epididymis:
101.6
liver:
97.0
male glands:
100.9
GJB2
ENSSSCG00000031936
ENSG00000165474
Gap junction protein beta 2
Group enriched
Detected in many
cornea:
90.1
male glands:
37.5
mouth:
41.1
skin:
52.8
GJB6
ENSSSCG00000036474
ENSG00000121742
Gap junction protein beta 6
Tissue enhanced
Detected in many
brain:
24.3
mouth:
21.2
skin:
39.1
GJB7
ENSSSCG00000033562
ENSG00000164411
Gap junction protein beta 7
Tissue enhanced
Detected in many
upper respiratory system:
16.8
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