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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GAK
ENSSSCG00000021289
ENSG00000178950
Cyclin G associated kinase
Low tissue specificity
Detected in all
GAL3ST3
ENSSSCG00000028015
ENSG00000175229
Galactose-3-O-sulfotransferase 3
Tissue enhanced
Detected in many
brain:
13.3
epididymis:
15.4
mesothelial tissue:
16.8
GAL3ST4
ENSSSCG00000007648
ENSG00000197093
Galactose-3-O-sulfotransferase 4
Low tissue specificity
Detected in all
GALC
ENSSSCG00000027865
ENSG00000054983
Galactocerebrosidase
Tissue enhanced
Detected in all
testis:
25.0
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALK1
ENSSSCG00000017203
ENSG00000108479
Galactokinase 1
Low tissue specificity
Detected in all
GALK2
ENSSSCG00000004651
ENSG00000156958
Galactokinase 2
Low tissue specificity
Detected in all
GALM
ENSSSCG00000008486
ENSG00000143891
Aldose 1-epimerase
Low tissue specificity
Detected in all
GALNS
ENSSSCG00000002645
ENSG00000141012
N-acetylgalactosamine-6-sulfatase precursor
Low tissue specificity
Detected in all
GALNT1
ENSSSCG00000003743
ENSG00000141429
Polypeptide N-acetylgalactosaminyltransferase 1
Low tissue specificity
Detected in all
GALNT10
ENSSSCG00000017072
ENSG00000164574
Polypeptide N-acetylgalactosaminyltransferase 10
Low tissue specificity
Detected in all
GALNT11
ENSSSCG00000016430
ENSG00000178234
Polypeptide N-acetylgalactosaminyltransferase 11
Low tissue specificity
Detected in all
GALNT13
ENSSSCG00000022671
ENSG00000144278
Polypeptide N-acetylgalactosaminyltransferase 13
Group enriched
Detected in many
brain:
36.2
pineal gland:
17.8
pituitary gland:
23.4
retina:
17.7
synovial tissue:
11.8
GALNT15
ENSSSCG00000011195
ENSG00000131386
Polypeptide N-acetylgalactosaminyltransferase 15 precursor
Tissue enhanced
Detected in all
cartilage:
57.6
penis:
38.6
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GALNT2
ENSSSCG00000010185
ENSG00000143641
Polypeptide N-acetylgalactosaminyltransferase 2
Tissue enhanced
Detected in all
male glands:
70.3
GALNT6
ENSSSCG00000026890
ENSG00000139629
Polypeptide N-acetylgalactosaminyltransferase 6
Tissue enhanced
Detected in many
esophagus:
50.7
male glands:
89.3
salivary gland:
53.5
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GALNT8
ENSSSCG00000000718
ENSG00000130035
Polypeptide N-acetylgalactosaminyltransferase 8
Tissue enriched
Detected in some
epididymis:
92.8
GALP
ENSSSCG00000003318
ENSG00000197487
Galanin-like peptide isoform 2 precursor
Tissue enhanced
Detected in many
brain:
18.9
liver:
33.8
vagus nerve:
25.7
GALR1
ENSSSCG00000036984
ENSG00000166573
Galanin receptor 1
Tissue enhanced
Detected in many
choroid plexus:
23.4
urinary bladder:
19.0
GALR2
ENSSSCG00000017189
ENSG00000182687
Galanin receptor 2
Tissue enhanced
Detected in some
brain:
8.7
ovary:
6.4
GALR3
ENSSSCG00000000121
ENSG00000128310
Galanin receptor 3
Low tissue specificity
Detected in many
GALT
ENSSSCG00000010969
ENSG00000213930
Galactose-1-phosphate uridylyltransferase
Low tissue specificity
Detected in all
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GAN
ENSSSCG00000002690
ENSG00000261609
Gigaxonin
Low tissue specificity
Detected in all
GANAB
ENSSSCG00000030653
ENSG00000089597
Neutral alpha-glucosidase AB precursor
Low tissue specificity
Detected in all
GANC
ENSSSCG00000004729
ENSG00000214013
Glucosidase alpha, neutral C
Tissue enhanced
Detected in all
skeletal muscle:
47.3
GAPDHS
ENSSSCG00000002888
ENSG00000105679
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tissue enriched
Detected in many
testis:
119.2
GAPT
ENSSSCG00000035276
ENSG00000175857
GRB2 binding adaptor protein, transmembrane
Low tissue specificity
Detected in all
GAPVD1
ENSSSCG00000005602
ENSG00000165219
GTPase activating protein and VPS9 domains 1
Low tissue specificity
Detected in all
GAR1
ENSSSCG00000009137
ENSG00000109534
GAR1 ribonucleoprotein
Low tissue specificity
Detected in all
GAREM1
ENSSSCG00000003731
ENSG00000141441
GRB2 associated regulator of MAPK1 subtype 1
Tissue enhanced
Detected in all
cartilage:
48.6
GAREM2
ENSSSCG00000008572
ENSG00000157833
GRB2 associated regulator of MAPK1 subtype 2
Tissue enhanced
Detected in many
brain:
13.7
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GARS
ENSSSCG00000016677
ENSG00000106105
Glycyl-tRNA synthetase
Low tissue specificity
Detected in all
GART
ENSSSCG00000030677
ENSG00000159131
Phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
Low tissue specificity
Detected in all
GAS1
ENSSSCG00000033321
ENSG00000180447
Growth arrest specific 1
Tissue enhanced
Detected in many
cartilage:
79.4
mesothelial tissue:
89.8
GAS2
ENSSSCG00000031940
ENSG00000148935
Growth arrest specific 2
Tissue enhanced
Detected in many
brain:
24.3
liver:
36.3
GAS2L1
ENSSSCG00000025564
ENSG00000185340
GAS2-like protein 1
Low tissue specificity
Detected in all
GAS2L2
ENSSSCG00000039395
ENSG00000270765
Growth arrest specific 2 like 2
Tissue enhanced
Detected in many
fallopian tube:
32.0
kidney:
15.2
upper respiratory system:
15.7
GAS2L3
ENSSSCG00000000874
ENSG00000139354
Growth arrest specific 2 like 3
Tissue enriched
Detected in all
vagus nerve:
70.2
GAS6
ENSSSCG00000009565
ENSG00000183087
Growth arrest-specific protein 6 precursor
Low tissue specificity
Detected in many
GAS7
ENSSSCG00000039056
ENSG00000007237
Growth arrest specific 7
Tissue enhanced
Detected in all
vagus nerve:
87.1
GAS8
ENSSSCG00000002633
ENSG00000141013
Growth arrest specific 8
Low tissue specificity
Detected in all
GATA1
ENSSSCG00000027237
ENSG00000102145
Erythroid transcription factor
Low tissue specificity
Detected in many
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATAD1
ENSSSCG00000031835
ENSG00000157259
GATA zinc finger domain containing 1
Low tissue specificity
Detected in all
GATAD2A
ENSSSCG00000013938
ENSG00000167491
GATA zinc finger domain containing 2A
Low tissue specificity
Detected in all
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