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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FOXP3
ENSSSCG00000012300
ENSG00000049768
Forkhead box protein P3
Tissue enriched
Detected in many
lymphoid tissue:
23.0
FOXP4
ENSSSCG00000001619
ENSG00000137166
Forkhead box P4
Tissue enhanced
Detected in all
stomach:
61.9
FOXQ1
ENSSSCG00000000991
ENSG00000164379
Forkhead box Q1
Group enriched
Detected in many
stomach:
72.9
urinary bladder:
51.6
FOXR2
ENSSSCG00000020805
ENSG00000189299
Forkhead box R2
Group enriched
Detected in some
epididymis:
7.3
testis:
4.1
FOXRED1
ENSSSCG00000030017
ENSG00000110074
FAD-dependent oxidoreductase domain-containing protein 1
Tissue enhanced
Detected in all
liver:
63.9
FOXRED2
ENSSSCG00000000142
ENSG00000100350
FAD-dependent oxidoreductase domain-containing protein 2 precursor
Tissue enhanced
Detected in all
epididymis:
28.1
FOXS1
ENSSSCG00000033613
ENSG00000179772
Forkhead box S1
Low tissue specificity
Detected in all
FPGS
ENSSSCG00000005626
ENSG00000136877
Folylpolyglutamate synthase
Low tissue specificity
Detected in all
FPGT
ENSSSCG00000003783
ENSG00000254685
Fucose-1-phosphate guanylyltransferase
Low tissue specificity
Detected in all
FRA10AC1
ENSSSCG00000024359
ENSG00000148690
Protein FRA10AC1
Low tissue specificity
Detected in all
FRAS1
ENSSSCG00000008991
ENSG00000138759
Fraser extracellular matrix complex subunit 1
Tissue enhanced
Detected in many
heart:
40.1
FRAT1
ENSSSCG00000032821
ENSG00000165879
FRAT1, WNT signaling pathway regulator
Low tissue specificity
Detected in many
FRAT2
ENSSSCG00000038904
ENSG00000181274
FRAT2, WNT signaling pathway regulator
Low tissue specificity
Detected in all
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FREM2
ENSSSCG00000009364
ENSG00000150893
FRAS1 related extracellular matrix protein 2
Tissue enhanced
Detected in many
choroid plexus:
53.6
kidney:
23.0
thyroid gland:
23.4
FREM3
ENSSSCG00000040070
ENSG00000183090
FRAS1 related extracellular matrix 3
Tissue enriched
Detected in some
epididymis:
15.6
FRK
ENSSSCG00000004434
ENSG00000111816
Fyn related Src family tyrosine kinase
Tissue enhanced
Detected in many
male glands:
15.9
upper respiratory system:
14.2
FRMD1
ENSSSCG00000004017
ENSG00000153303
FERM domain containing 1
Group enriched
Detected in many
gallbladder:
17.9
kidney:
49.5
testis:
53.6
FRMD3
ENSSSCG00000010962
ENSG00000172159
FERM domain containing 3
Low tissue specificity
Detected in all
FRMD4A
ENSSSCG00000011056
ENSG00000151474
FERM domain containing 4A
Low tissue specificity
Detected in all
FRMD4B
ENSSSCG00000011511
ENSG00000114541
FERM domain containing 4B
Low tissue specificity
Detected in all
FRMD5
ENSSSCG00000004694
ENSG00000171877
FERM domain containing 5
Tissue enhanced
Detected in many
brain:
33.6
ductus deferens:
26.5
epididymis:
22.0
male glands:
32.1
FRMD6
ENSSSCG00000005027
ENSG00000139926
FERM domain containing 6
Low tissue specificity
Detected in all
FRMD7
ENSSSCG00000023618
ENSG00000165694
FERM domain containing 7
Tissue enhanced
Detected in some
brain:
29.2
ductus deferens:
19.7
FRMD8
ENSSSCG00000012992
ENSG00000126391
FERM domain containing 8
Tissue enhanced
Detected in all
vagus nerve:
47.9
FRMPD1
ENSSSCG00000005352
ENSG00000070601
FERM and PDZ domain containing 1
Tissue enriched
Detected in some
retina:
50.7
FRRS1
ENSSSCG00000006873
ENSG00000156869
Ferric-chelate reductase 1 precursor
Tissue enhanced
Detected in all
epididymis:
52.6
FRS2
ENSSSCG00000000493
ENSG00000166225
Fibroblast growth factor receptor substrate 2
Tissue enhanced
Detected in all
adrenal gland:
80.7
FRS3
ENSSSCG00000001624
ENSG00000137218
Fibroblast growth factor receptor substrate 3
Tissue enhanced
Detected in all
testis:
21.3
FRY
ENSSSCG00000009338
ENSG00000073910
FRY microtubule binding protein
Tissue enhanced
Detected in all
cartilage:
79.0
FRYL
ENSSSCG00000008826
ENSG00000075539
FRY like transcription coactivator
Low tissue specificity
Detected in all
FSCN1
ENSSSCG00000007586
ENSG00000075618
Fascin
Tissue enhanced
Detected in many
brain:
55.1
FSCN2
ENSSSCG00000026155
ENSG00000186765
Fascin actin-bundling protein 2, retinal
Tissue enhanced
Detected in many
choroid plexus:
22.9
pineal gland:
21.6
retina:
57.2
FSD1L
ENSSSCG00000005426
ENSG00000106701
Fibronectin type III and SPRY domain containing 1 like
Tissue enhanced
Detected in all
choroid plexus:
46.0
FSHB
ENSSSCG00000013328
ENSG00000131808
Follitropin subunit beta
Tissue enriched
Detected in many
pituitary gland:
353.5
FSIP1
ENSSSCG00000040418
ENSG00000150667
Fibrous sheath interacting protein 1
Tissue enhanced
Detected in many
choroid plexus:
12.4
fallopian tube:
18.2
testis:
12.0
FSTL1
ENSSSCG00000039426
ENSG00000163430
Follistatin like 1
Tissue enhanced
Detected in all
mesothelial tissue:
125.1
FSTL3
ENSSSCG00000037102
ENSG00000070404
Follistatin like 3
Tissue enhanced
Detected in many
ovary:
73.2
FTL
ENSSSCG00000003153
ENSG00000087086
Ferritin light chain
Tissue enhanced
Detected in all
lens:
546.5
FTMT
ENSSSCG00000014231
ENSG00000181867
Ferritin mitochondrial
Tissue enriched
Detected in some
testis:
61.8
FTO
ENSSSCG00000035949
ENSG00000140718
Alpha-ketoglutarate-dependent dioxygenase FTO
Low tissue specificity
Detected in all
FTSJ1
ENSSSCG00000025599
ENSG00000068438
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
Low tissue specificity
Detected in all
FTSJ3
ENSSSCG00000017288
ENSG00000108592
FtsJ RNA methyltransferase homolog 3
Low tissue specificity
Detected in all
FUBP1
ENSSSCG00000003771
ENSG00000162613
Far upstream element binding protein 1
Low tissue specificity
Detected in all
FUBP3
ENSSSCG00000005702
ENSG00000107164
Far upstream element-binding protein 3
Low tissue specificity
Detected in all
FUCA1
ENSSSCG00000027659
ENSG00000179163
Tissue alpha-L-fucosidase precursor
Low tissue specificity
Detected in all
FUCA2
ENSSSCG00000004133
ENSG00000001036
Alpha-L-fucosidase 2
Low tissue specificity
Detected in all
FUK
ENSSSCG00000025425
ENSG00000157353
Fucokinase
Low tissue specificity
Detected in all
FUNDC1
ENSSSCG00000012258
ENSG00000069509
FUN14 domain containing 1
Low tissue specificity
Detected in all
FUNDC2
ENSSSCG00000012817
FUN14 domain-containing protein 2
Low tissue specificity
Detected in all
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