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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM207A
ENSSSCG00000028571
ENSG00000160256
Family with sequence similarity 207 member A
Low tissue specificity
Detected in all
FAM208A
ENSSSCG00000024201
ENSG00000163946
Family with sequence similarity 208 member A
Low tissue specificity
Detected in all
FAM20A
ENSSSCG00000017258
ENSG00000108950
FAM20A, golgi associated secretory pathway pseudokinase
Tissue enhanced
Detected in many
cartilage:
63.8
liver:
25.9
FAM20B
ENSSSCG00000015524
ENSG00000116199
FAM20B, glycosaminoglycan xylosylkinase
Low tissue specificity
Detected in all
FAM20C
ENSSSCG00000020813
ENSG00000177706
FAM20C, golgi associated secretory pathway kinase
Tissue enhanced
Detected in all
cartilage:
47.3
FAM210A
ENSSSCG00000030438
ENSG00000177150
Family with sequence similarity 210 member A
Low tissue specificity
Detected in all
FAM210B
ENSSSCG00000007492
ENSG00000124098
Protein FAM210B
Low tissue specificity
Detected in all
FAM212A
ENSSSCG00000033410
ENSG00000185614
Family with sequence similarity 212 member A
Low tissue specificity
Detected in all
FAM213A
ENSSSCG00000010340
ENSG00000122378
Redox-regulatory protein FAM213A isoform 2
Low tissue specificity
Detected in all
FAM213B
ENSSSCG00000026554
ENSG00000157870
Prostamide/prostaglandin F synthase
Tissue enhanced
Detected in many
brain:
21.2
lens:
53.5
FAM214A
ENSSSCG00000004617
ENSG00000047346
Family with sequence similarity 214 member A
Low tissue specificity
Detected in all
FAM214B
ENSSSCG00000005301
ENSG00000005238
Family with sequence similarity 214 member B
Low tissue specificity
Detected in all
FAM216A
ENSSSCG00000009822
ENSG00000204856
Protein FAM216A
Low tissue specificity
Detected in all
FAM216B
ENSSSCG00000009428
ENSG00000179813
Protein FAM216B
Tissue enhanced
Detected in all
fallopian tube:
53.2
FAM217B
ENSSSCG00000007531
ENSG00000196227
Family with sequence similarity 217 member B
Low tissue specificity
Detected in all
FAM219A
ENSSSCG00000035455
ENSG00000164970
Family with sequence similarity 219 member A
Tissue enhanced
Detected in all
brain:
31.0
FAM219B
ENSSSCG00000029776
ENSG00000178761
Protein FAM219B
Low tissue specificity
Detected in all
FAM221B
ENSSSCG00000005324
ENSG00000204930
Family with sequence similarity 221 member B
Tissue enriched
Detected in many
testis:
43.6
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM222B
ENSSSCG00000039321
ENSG00000173065
Family with sequence similarity 222 member B
Low tissue specificity
Detected in all
FAM227B
ENSSSCG00000004648
ENSG00000166262
Family with sequence similarity 227 member B
Tissue enriched
Detected in many
testis:
38.7
FAM229B
ENSSSCG00000036621
ENSG00000203778
Family with sequence similarity 229 member B
Tissue enhanced
Detected in all
testis:
33.3
FAM234B
ENSSSCG00000000619
ENSG00000084444
Protein FAM234B
Tissue enhanced
Detected in all
brain:
31.8
male glands:
31.5
FAM237A
ENSSSCG00000036691
ENSG00000235118
Family with sequence similarity 237 member A
Low tissue specificity
Detected in all
FAM237B
ENSSSCG00000031091
ENSG00000283267
Family with sequence similarity 237 member B
Low tissue specificity
Detected in all
FAM32A
ENSSSCG00000013855
ENSG00000105058
Protein FAM32A
Low tissue specificity
Detected in all
FAM35A
ENSSSCG00000027767
ENSG00000122376
Family with sequence similarity 35 member A
Low tissue specificity
Detected in all
FAM3A
ENSSSCG00000028934
ENSG00000071889
Family with sequence similarity 3 member A
Low tissue specificity
Detected in all
FAM3B
ENSSSCG00000012075
ENSG00000183844
Family with sequence similarity 3 member B
Tissue enhanced
Detected in many
gallbladder:
30.3
large intestine:
31.3
stomach:
102.7
FAM3C
ENSSSCG00000016616
ENSG00000196937
Family with sequence similarity 3 member C
Tissue enhanced
Detected in all
male glands:
75.3
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
FAM43A
ENSSSCG00000011828
ENSG00000185112
Family with sequence similarity 43 member A
Low tissue specificity
Detected in all
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FAM45A
ENSSSCG00000010680
ENSG00000119979
Family with sequence similarity 45 member A
Low tissue specificity
Detected in all
FAM46A
ENSSSCG00000004464
ENSG00000112773
Family with sequence similarity 46 member A
Low tissue specificity
Detected in all
FAM46B
ENSSSCG00000036755
ENSG00000158246
Family with sequence similarity 46 member B
Tissue enhanced
Detected in many
smooth muscle:
36.4
FAM46C
ENSSSCG00000006729
ENSG00000183508
Protein FAM46C
Tissue enhanced
Detected in all
lens:
86.2
male glands:
78.3
testis:
66.6
FAM49A
ENSSSCG00000008617
ENSG00000197872
Family with sequence similarity 49 member A
Tissue enhanced
Detected in all
lymphoid tissue:
42.3
FAM50A
ENSSSCG00000025303
ENSG00000071859
Family with sequence similarity 50 member A
Low tissue specificity
Detected in all
FAM53B
ENSSSCG00000010732
ENSG00000189319
Family with sequence similarity 53 member B
Tissue enhanced
Detected in all
lymphoid tissue:
53.7
FAM53C
ENSSSCG00000021092
ENSG00000120709
Family with sequence similarity 53 member C
Low tissue specificity
Detected in all
FAM57A
ENSSSCG00000017810
ENSG00000167695
Family with sequence similarity 57 member A
Tissue enhanced
Detected in all
breast:
19.9
testis:
33.0
FAM69B
ENSSSCG00000005837
ENSG00000165716
Family with sequence similarity 69 member B
Low tissue specificity
Detected in all
FAM69C
ENSSSCG00000039486
ENSG00000187773
Family with sequence similarity 69 member C
Low tissue specificity
Detected in all
FAM71B
ENSSSCG00000017057
ENSG00000170613
Family with sequence similarity 71 member B
Tissue enriched
Detected in many
testis:
77.7
FAM71E1
ENSSSCG00000003219
ENSG00000142530
Family with sequence similarity 71 member E1
Tissue enriched
Detected in many
testis:
106.7
FAM76A
ENSSSCG00000027894
ENSG00000009780
Protein FAM76A
Low tissue specificity
Detected in all
FAM76B
ENSSSCG00000014967
ENSG00000077458
Family with sequence similarity 76 member B
Low tissue specificity
Detected in all
FAM81A
ENSSSCG00000004586
ENSG00000157470
Family with sequence similarity 81 member A
Tissue enhanced
Detected in many
brain:
28.4
FAM83A
ENSSSCG00000005986
ENSG00000147689
Family with sequence similarity 83 member A
Tissue enriched
Detected in many
cornea:
59.3
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