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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EVA1A
ENSSSCG00000035958
ENSG00000115363
Eva-1 homolog A, regulator of programmed cell death
Group enriched
Detected in all
liver:
81.2
male glands:
20.9
EVA1B
ENSSSCG00000033892
ENSG00000142694
Eva-1 homolog B
Tissue enhanced
Detected in many
cartilage:
51.6
EVA1C
ENSSSCG00000021598
ENSG00000166979
Eva-1 homolog C
Tissue enhanced
Detected in all
mesothelial tissue:
39.7
EVC
ENSSSCG00000032637
ENSG00000072840
EvC ciliary complex subunit 1
Tissue enhanced
Detected in all
kidney:
55.2
EVC2
ENSSSCG00000024399
ENSG00000173040
EvC ciliary complex subunit 2
Tissue enhanced
Detected in all
kidney:
32.2
EVI2B
ENSSSCG00000017750
ENSG00000185862
Ecotropic viral integration site 2B
Tissue enhanced
Detected in all
lymphoid tissue:
44.5
EVI5
ENSSSCG00000006901
ENSG00000067208
Ecotropic viral integration site 5
Low tissue specificity
Detected in all
EVI5L
ENSSSCG00000013585
ENSG00000142459
Ecotropic viral integration site 5 like
Low tissue specificity
Detected in all
EVL
ENSSSCG00000037105
ENSG00000196405
Ena/VASP-like protein
Tissue enhanced
Detected in all
lymphoid tissue:
112.9
EVPL
ENSSSCG00000017192
ENSG00000167880
Envoplakin
Tissue enhanced
Detected in many
cornea:
52.6
mouth:
25.1
stomach:
28.1
EWSR1
ENSSSCG00000009974
ENSG00000182944
RNA-binding protein EWS
Low tissue specificity
Detected in all
EXD1
ENSSSCG00000004752
ENSG00000178997
Exonuclease 3'-5' domain containing 1
Tissue enhanced
Detected in many
epididymis:
12.9
testis:
21.5
EXD2
ENSSSCG00000002305
ENSG00000081177
Exonuclease 3'-5' domain containing 2
Low tissue specificity
Detected in all
EXD3
ENSSSCG00000005855
ENSG00000187609
Exonuclease 3'-5' domain containing 3
Low tissue specificity
Detected in all
EXO5
ENSSSCG00000003980
ENSG00000164002
Exonuclease 5
Low tissue specificity
Detected in all
EXOC1
ENSSSCG00000023269
ENSG00000090989
Exocyst complex component 1
Low tissue specificity
Detected in all
EXOC2
ENSSSCG00000000985
ENSG00000112685
Exocyst complex component 2
Low tissue specificity
Detected in all
EXOC3
ENSSSCG00000039607
ENSG00000180104
Exocyst complex component 3
Low tissue specificity
Detected in all
EXOC3L1
ENSSSCG00000002788
ENSG00000179044
Exocyst complex component 3 like 1
Low tissue specificity
Detected in many
EXOC3L4
ENSSSCG00000036871
ENSG00000205436
Exocyst complex component 3 like 4
Low tissue specificity
Detected in many
EXOC4
ENSSSCG00000016543
ENSG00000131558
Exocyst complex component 4
Low tissue specificity
Detected in all
EXOC5
ENSSSCG00000005066
ENSG00000070367
Exocyst complex component 5
Low tissue specificity
Detected in all
EXOC6
ENSSSCG00000010473
ENSG00000138190
Exocyst complex component 6
Low tissue specificity
Detected in all
EXOC6B
ENSSSCG00000008310
ENSG00000144036
Exocyst complex component 6B
Low tissue specificity
Detected in all
EXOC7
ENSSSCG00000017190
ENSG00000182473
Exocyst complex component 7
Low tissue specificity
Detected in all
EXOC8
ENSSSCG00000010174
ENSG00000116903
Exocyst complex component 8
Low tissue specificity
Detected in all
EXOG
ENSSSCG00000011258
ENSG00000157036
Exo/endonuclease G
Low tissue specificity
Detected in all
EXOSC1
ENSSSCG00000010518
ENSG00000171311
Exosome component 1
Low tissue specificity
Detected in all
EXOSC10
ENSSSCG00000003412
ENSG00000171824
Exosome component 10
Low tissue specificity
Detected in all
EXOSC2
ENSSSCG00000005704
ENSG00000130713
Exosome component 2
Low tissue specificity
Detected in all
EXOSC3
ENSSSCG00000005355
ENSG00000107371
Exosome component 3
Tissue enriched
Detected in all
testis:
28.4
EXOSC4
ENSSSCG00000005925
ENSG00000178896
Exosome component 4
Low tissue specificity
Detected in all
EXOSC5
ENSSSCG00000003015
ENSG00000077348
Exosome complex component RRP46
Low tissue specificity
Detected in all
EXOSC6
ENSSSCG00000002719
ENSG00000223496
Exosome component 6
Low tissue specificity
Detected in all
EXOSC7
ENSSSCG00000011300
ENSG00000075914
Exosome complex component RRP42
Low tissue specificity
Detected in all
EXOSC8
ENSSSCG00000009358
ENSG00000120699
Exosome component 8
Tissue enhanced
Detected in all
lens:
51.5
EXOSC9
ENSSSCG00000009096
ENSG00000123737
Exosome component 9
Low tissue specificity
Detected in all
EXPH5
ENSSSCG00000015010
ENSG00000110723
Exophilin 5
Tissue enhanced
Detected in many
liver:
32.8
skin:
45.3
EXT1
ENSSSCG00000006009
ENSG00000182197
Exostosin glycosyltransferase 1
Low tissue specificity
Detected in all
EXT2
ENSSSCG00000013281
ENSG00000151348
Exostosin glycosyltransferase 2
Low tissue specificity
Detected in all
EXTL1
ENSSSCG00000029558
ENSG00000158008
Exostosin like glycosyltransferase 1
Group enriched
Detected in many
cartilage:
76.1
liver:
72.3
EXTL2
ENSSSCG00000006861
ENSG00000162694
Exostosin-like 2
Tissue enhanced
Detected in many
brain:
20.5
testis:
17.5
EXTL3
ENSSSCG00000009680
ENSG00000012232
Exostosin like glycosyltransferase 3
Low tissue specificity
Detected in all
EYA2
ENSSSCG00000007453
ENSG00000064655
EYA transcriptional coactivator and phosphatase 2
Tissue enhanced
Detected in all
cartilage:
112.8
EYA3
ENSSSCG00000003580
ENSG00000158161
EYA transcriptional coactivator and phosphatase 3
Low tissue specificity
Detected in all
EZH1
ENSSSCG00000017382
ENSG00000108799
Histone-lysine N-methyltransferase EZH1
Low tissue specificity
Detected in all
EZH2
ENSSSCG00000028840
ENSG00000106462
Histone-lysine N-methyltransferase EZH2
Tissue enhanced
Detected in all
lymphoid tissue:
51.5
testis:
48.3
EZR
ENSSSCG00000004058
ENSG00000092820
Ezrin
Tissue enhanced
Detected in all
mesothelial tissue:
172.4
F10
ENSSSCG00000009558
ENSG00000126218
Coagulation factor X precursor
Tissue enriched
Detected in many
liver:
84.8
F11R
ENSSSCG00000006369
ENSG00000158769
Junctional adhesion molecule A precursor
Low tissue specificity
Detected in many
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