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Human disease related genes
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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
EPB42
ENSSSCG00000004714
ENSG00000166947
Erythrocyte membrane protein band 4.2
Low tissue specificity
Detected in all
EPC1
ENSSSCG00000011028
ENSG00000120616
Enhancer of polycomb homolog 1
Low tissue specificity
Detected in all
EPC2
ENSSSCG00000027211
ENSG00000135999
Enhancer of polycomb homolog 2
Low tissue specificity
Detected in all
EPCAM
ENSSSCG00000008429
ENSG00000119888
Epithelial cell adhesion molecule
Tissue enhanced
Detected in many
large intestine:
54.3
male glands:
76.4
EPDR1
ENSSSCG00000020963
ENSG00000086289
Ependymin related 1
Tissue enhanced
Detected in many
brain:
36.2
lens:
43.4
EPG5
ENSSSCG00000021072
ENSG00000152223
Ectopic P-granules autophagy protein 5 homolog
Low tissue specificity
Detected in all
EPGN
ENSSSCG00000040736
ENSG00000182585
Epithelial mitogen
Low tissue specificity
Detected in all
EPHA2
ENSSSCG00000003471
ENSG00000142627
EPH receptor A2
Low tissue specificity
Detected in all
EPHA4
ENSSSCG00000016230
ENSG00000116106
Ephrin type-A receptor 4 precursor
Tissue enhanced
Detected in many
brain:
38.2
EPHA7
ENSSSCG00000004336
ENSG00000135333
EPH receptor A7
Tissue enhanced
Detected in many
brain:
41.3
smooth muscle:
21.2
EPHB1
ENSSSCG00000024492
ENSG00000154928
EPH receptor B1
Tissue enhanced
Detected in many
brain:
27.2
cartilage:
19.8
EPHB2
ENSSSCG00000003527
ENSG00000133216
EPH receptor B2
Tissue enhanced
Detected in many
large intestine:
32.1
stomach:
21.6
EPHB3
ENSSSCG00000026516
ENSG00000182580
EPH receptor B3
Tissue enhanced
Detected in all
male glands:
45.3
EPHB4
ENSSSCG00000007675
ENSG00000196411
EPH receptor B4
Low tissue specificity
Detected in many
EPHB6
ENSSSCG00000016473
ENSG00000106123
EPH receptor B6
Tissue enhanced
Detected in many
lymphoid tissue:
43.6
male glands:
24.3
EPHX1
ENSSSCG00000010853
ENSG00000143819
Epoxide hydrolase 1 precursor
Tissue enhanced
Detected in all
choroid plexus:
175.4
liver:
129.4
EPHX2
ENSSSCG00000009666
ENSG00000120915
Bifunctional epoxide hydrolase 2
Tissue enhanced
Detected in all
liver:
42.4
EPHX3
ENSSSCG00000028144
ENSG00000105131
Epoxide hydrolase 3
Tissue enhanced
Detected in many
skin:
28.0
EPHX4
ENSSSCG00000032057
ENSG00000172031
Epoxide hydrolase 4
Tissue enhanced
Detected in many
brain:
18.0
cartilage:
16.7
EPM2AIP1
ENSSSCG00000030247
ENSG00000178567
EPM2A interacting protein 1
Low tissue specificity
Detected in all
EPN2
ENSSSCG00000040457
ENSG00000072134
Epsin 2
Low tissue specificity
Detected in all
EPOP
ENSSSCG00000035677
ENSG00000273604
Elongin BC and polycomb repressive complex 2 associated protein
Tissue enhanced
Detected in many
cartilage:
17.5
testis:
19.9
EPOR
ENSSSCG00000013618
ENSG00000187266
Erythropoietin receptor
Tissue enhanced
Detected in many
brain:
9.0
lymphoid tissue:
10.8
EPRS
ENSSSCG00000010821
ENSG00000136628
Glutamyl-prolyl-tRNA synthetase
Low tissue specificity
Detected in all
EPS15
ENSSSCG00000003872
ENSG00000085832
Epidermal growth factor receptor pathway substrate 15
Low tissue specificity
Detected in all
EPS15L1
ENSSSCG00000013857
ENSG00000127527
Epidermal growth factor receptor pathway substrate 15 like 1
Low tissue specificity
Detected in all
EPS8
ENSSSCG00000000600
ENSG00000151491
Epidermal growth factor receptor pathway substrate 8
Tissue enhanced
Detected in all
thyroid gland:
65.7
EPS8L1
ENSSSCG00000026417
ENSG00000131037
EPS8 like 1
Tissue enhanced
Detected in many
mouth:
51.3
skin:
53.4
EPS8L2
ENSSSCG00000012848
ENSG00000177106
EPS8 like 2
Tissue enhanced
Detected in many
stomach:
77.6
EPS8L3
ENSSSCG00000006820
ENSG00000198758
EPS8 like 3
Group enriched
Detected in all
gallbladder:
17.0
large intestine:
29.0
small intestine:
47.0
stomach:
19.6
EPSTI1
ENSSSCG00000037572
ENSG00000133106
Epithelial stromal interaction 1
Tissue enhanced
Detected in many
small intestine:
25.4
ERAL1
ENSSSCG00000017776
ENSG00000132591
Era like 12S mitochondrial rRNA chaperone 1
Low tissue specificity
Detected in all
ERAP1
ENSSSCG00000014171
ENSG00000164307
Endoplasmic reticulum aminopeptidase 1
Low tissue specificity
Detected in all
ERAP2
ENSSSCG00000027860
ENSG00000164308
Endoplasmic reticulum aminopeptidase 2
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
ERBB2
ENSSSCG00000017497
ENSG00000141736
Receptor tyrosine-protein kinase erbB-2 precursor
Low tissue specificity
Detected in all
ERBIN
ENSSSCG00000016954
ENSG00000112851
Erbb2 interacting protein
Low tissue specificity
Detected in all
ERC1
ENSSSCG00000000755
ENSG00000082805
ELKS/RAB6-interacting/CAST family member 1
Low tissue specificity
Detected in all
ERCC1
ENSSSCG00000036455
ENSG00000012061
DNA excision repair protein ERCC-1
Low tissue specificity
Detected in all
ERCC2
ENSSSCG00000039929
ENSG00000104884
ERCC excision repair 2, TFIIH core complex helicase subunit
Tissue enhanced
Detected in all
retina:
46.7
ERCC3
ENSSSCG00000015721
ENSG00000163161
ERCC excision repair 3, TFIIH core complex helicase subunit
Low tissue specificity
Detected in all
ERCC4
ENSSSCG00000007881
ENSG00000175595
ERCC excision repair 4, endonuclease catalytic subunit
Low tissue specificity
Detected in all
ERCC5
ENSSSCG00000032046
ENSG00000134899
ERCC excision repair 5, endonuclease
Low tissue specificity
Detected in all
ERCC6
ENSSSCG00000010391
ENSG00000225830
ERCC excision repair 6, chromatin remodeling factor
Low tissue specificity
Detected in all
ERCC8
ENSSSCG00000016934
ENSG00000049167
ERCC excision repair 8, CSA ubiquitin ligase complex subunit
Low tissue specificity
Detected in all
EREG
ENSSSCG00000038185
ENSG00000124882
Epiregulin
Low tissue specificity
Detected in all
ERF
ENSSSCG00000032154
ENSG00000105722
ETS2 repressor factor
Low tissue specificity
Detected in all
ERG28
ENSSSCG00000036494
ENSG00000133935
Probable ergosterol biosynthetic protein 28 precursor
Tissue enhanced
Detected in all
liver:
79.3
ERGIC1
ENSSSCG00000016988
ENSG00000113719
Endoplasmic reticulum-golgi intermediate compartment 1
Tissue enhanced
Detected in all
male glands:
91.8
ERGIC2
ENSSSCG00000000536
ENSG00000087502
Endoplasmic reticulum-Golgi intermediate compartment protein 2
Tissue enhanced
Detected in all
male glands:
81.7
ERGIC3
ENSSSCG00000034045
ENSG00000125991
ERGIC and golgi 3
Low tissue specificity
Detected in all
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