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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DNAJC25
ENSSSCG00000005460
ENSG00000059769
DnaJ heat shock protein family (Hsp40) member C25
Low tissue specificity
Detected in all
DNAJC27
ENSSSCG00000008577
ENSG00000115137
DnaJ heat shock protein family (Hsp40) member C27
Tissue enhanced
Detected in many
brain:
15.9
testis:
14.4
DNAJC28
ENSSSCG00000028192
ENSG00000177692
DnaJ heat shock protein family (Hsp40) member C28
Low tissue specificity
Detected in all
DNAJC3
ENSSSCG00000026082
ENSG00000102580
DnaJ homolog subfamily C member 3 precursor
Low tissue specificity
Detected in all
DNAJC30
ENSSSCG00000007712
ENSG00000176410
DnaJ heat shock protein family (Hsp40) member C30
Low tissue specificity
Detected in all
DNAJC5
ENSSSCG00000031602
ENSG00000101152
DnaJ heat shock protein family (Hsp40) member C5
Low tissue specificity
Detected in all
DNAJC8
ENSSSCG00000038907
ENSG00000126698
DnaJ heat shock protein family (Hsp40) member C8
Low tissue specificity
Detected in all
DNAJC9
ENSSSCG00000023482
ENSG00000213551
DnaJ heat shock protein family (Hsp40) member C9
Low tissue specificity
Detected in all
DNAL1
ENSSSCG00000039469
ENSG00000119661
Dynein axonemal light chain 1
Tissue enhanced
Detected in all
pineal gland:
29.7
DNAL4
ENSSSCG00000000093
ENSG00000100246
Dynein light chain 4, axonemal
Low tissue specificity
Detected in all
DNASE1
ENSSSCG00000036527
ENSG00000213918
Deoxyribonuclease-1 precursor
Low tissue specificity
Detected in all
DNASE1L1
ENSSSCG00000037032
ENSG00000013563
Deoxyribonuclease-1-like 1 precursor
Low tissue specificity
Detected in many
DNASE1L2
ENSSSCG00000024587
ENSG00000167968
Deoxyribonuclease 1 like 2
Low tissue specificity
Detected in many
DNASE2
ENSSSCG00000013731
ENSG00000105612
Deoxyribonuclease-2-alpha precursor
Low tissue specificity
Detected in all
DND1
ENSSSCG00000014374
ENSG00000256453
DND microRNA-mediated repression inhibitor 1
Low tissue specificity
Detected in all
DNLZ
ENSSSCG00000034732
ENSG00000213221
DNL-type zinc finger
Low tissue specificity
Detected in all
DNM1
ENSSSCG00000005641
ENSG00000106976
Dynamin 1
Tissue enhanced
Detected in many
brain:
73.2
cartilage:
41.6
DNM1L
ENSSSCG00000000529
ENSG00000087470
Dynamin 1 like
Low tissue specificity
Detected in all
DNM2
ENSSSCG00000013630
ENSG00000079805
Dynamin 2
Tissue enhanced
Detected in all
male glands:
108.5
DNMBP
ENSSSCG00000010544
ENSG00000107554
Dynamin binding protein
Tissue enriched
Detected in all
lens:
96.5
DNMT1
ENSSSCG00000013659
ENSG00000130816
DNA (cytosine-5)-methyltransferase 1
Low tissue specificity
Detected in all
DNMT3A
ENSSSCG00000029413
ENSG00000119772
DNA (cytosine-5)-methyltransferase 3A
Low tissue specificity
Detected in all
DNMT3B
ENSSSCG00000007252
ENSG00000088305
DNA methyltransferase 3 beta
Low tissue specificity
Detected in many
DNPEP
ENSSSCG00000016220
ENSG00000123992
Aspartyl aminopeptidase
Tissue enhanced
Detected in all
testis:
71.0
DNPH1
ENSSSCG00000026568
ENSG00000112667
2'-deoxynucleoside 5'-phosphate N-hydrolase 1
Low tissue specificity
Detected in all
DNTTIP1
ENSSSCG00000007422
ENSG00000101457
Deoxynucleotidyltransferase terminal interacting protein 1
Low tissue specificity
Detected in all
DNTTIP2
ENSSSCG00000006892
ENSG00000067334
Deoxynucleotidyltransferase terminal-interacting protein 2
Low tissue specificity
Detected in all
DOC2A
ENSSSCG00000034635
ENSG00000149927
Double C2 domain alpha
Tissue enriched
Detected in many
brain:
22.6
DOC2B
ENSSSCG00000039412
ENSG00000272636
Double C2 domain beta
Tissue enhanced
Detected in many
brain:
33.7
cartilage:
67.2
DOCK1
ENSSSCG00000035045
ENSG00000150760
Dedicator of cytokinesis 1
Low tissue specificity
Detected in all
DOCK10
ENSSSCG00000016237
ENSG00000135905
Dedicator of cytokinesis 10
Tissue enhanced
Detected in all
brain:
44.2
lymphoid tissue:
55.3
DOCK11
ENSSSCG00000012634
ENSG00000147251
Dedicator of cytokinesis 11
Tissue enhanced
Detected in many
epididymis:
35.3
lymphoid tissue:
39.2
DOCK2
ENSSSCG00000017008
ENSG00000134516
Dedicator of cytokinesis 2
Tissue enhanced
Detected in many
lymphoid tissue:
51.5
stomach:
28.8
DOCK4
ENSSSCG00000025602
ENSG00000128512
Dedicator of cytokinesis 4
Tissue enhanced
Detected in all
brain:
47.0
DOCK5
ENSSSCG00000009650
ENSG00000147459
Dedicator of cytokinesis 5
Tissue enriched
Detected in many
lens:
100.0
DOCK6
ENSSSCG00000038604
ENSG00000130158
Dedicator of cytokinesis 6
Low tissue specificity
Detected in many
DOCK7
ENSSSCG00000003818
ENSG00000116641
Dedicator of cytokinesis 7
Low tissue specificity
Detected in all
DOCK8
ENSSSCG00000005240
ENSG00000107099
Dedicator of cytokinesis 8
Tissue enhanced
Detected in many
lymphoid tissue:
48.5
DOCK9
ENSSSCG00000022112
ENSG00000088387
Dedicator of cytokinesis 9
Low tissue specificity
Detected in all
DOHH
ENSSSCG00000013478
ENSG00000129932
Deoxyhypusine hydroxylase
Low tissue specificity
Detected in all
DOK1
ENSSSCG00000008265
ENSG00000115325
Docking protein 1
Tissue enhanced
Detected in many
cartilage:
48.4
DOK2
ENSSSCG00000009612
ENSG00000147443
Docking protein 2
Low tissue specificity
Detected in many
DOK4
ENSSSCG00000029165
ENSG00000125170
Docking protein 4
Tissue enriched
Detected in all
lens:
53.0
DOK5
ENSSSCG00000007488
ENSG00000101134
Docking protein 5
Tissue enhanced
Detected in many
brain:
23.1
retina:
16.1
skeletal muscle:
14.9
DOLK
ENSSSCG00000005666
ENSG00000175283
Dolichol kinase
Low tissue specificity
Detected in all
DOLPP1
ENSSSCG00000031669
ENSG00000167130
Dolichyldiphosphatase 1
Low tissue specificity
Detected in all
DONSON
ENSSSCG00000027089
ENSG00000159147
Downstream neighbor of SON
Low tissue specificity
Detected in all
DOPEY1
ENSSSCG00000004457
ENSG00000083097
Dopey family member 1
Low tissue specificity
Detected in all
DOPEY2
ENSSSCG00000012054
ENSG00000142197
Dopey family member 2
Tissue enriched
Detected in many
male glands:
125.4
DOT1L
ENSSSCG00000013457
ENSG00000104885
DOT1 like histone lysine methyltransferase
Tissue enhanced
Detected in all
testis:
58.9
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