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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DCAF15
ENSSSCG00000013763
ENSG00000132017
DDB1 and CUL4 associated factor 15
Low tissue specificity
Detected in all
DCAF16
ENSSSCG00000040393
ENSG00000163257
DDB1 and CUL4 associated factor 16
Low tissue specificity
Detected in all
DCAF17
ENSSSCG00000015947
ENSG00000115827
DDB1 and CUL4 associated factor 17
Low tissue specificity
Detected in all
DCAF5
ENSSSCG00000039701
ENSG00000139990
DDB1 and CUL4 associated factor 5
Low tissue specificity
Detected in all
DCAF6
ENSSSCG00000006303
ENSG00000143164
DDB1 and CUL4 associated factor 6
Tissue enhanced
Detected in all
skeletal muscle:
99.3
DCAF7
ENSSSCG00000017294
ENSG00000136485
DDB1 and CUL4 associated factor 7
Low tissue specificity
Detected in all
DCAKD
ENSSSCG00000017340
ENSG00000172992
Dephospho-CoA kinase domain containing
Low tissue specificity
Detected in all
DCBLD1
ENSSSCG00000004254
ENSG00000164465
Discoidin, CUB and LCCL domain containing 1
Tissue enhanced
Detected in many
lens:
32.3
DCBLD2
ENSSSCG00000011977
ENSG00000057019
Discoidin, CUB and LCCL domain containing 2
Tissue enhanced
Detected in all
ovary:
62.9
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DCDC1
ENSSSCG00000013326
ENSG00000170959
Doublecortin domain containing 1
Tissue enhanced
Detected in many
cornea:
50.0
fallopian tube:
24.3
DCDC2B
ENSSSCG00000022014
ENSG00000222046
Doublecortin domain containing 2B
Tissue enhanced
Detected in all
fallopian tube:
39.8
upper respiratory system:
35.3
DCHS1
ENSSSCG00000029189
ENSG00000166341
Dachsous cadherin-related 1
Tissue enhanced
Detected in many
cartilage:
47.4
DCK
ENSSSCG00000008942
ENSG00000156136
Deoxycytidine kinase
Tissue enriched
Detected in all
lymphoid tissue:
117.9
DCLK2
ENSSSCG00000009023
ENSG00000170390
Doublecortin like kinase 2
Tissue enhanced
Detected in all
brain:
39.9
lens:
55.9
DCLRE1A
ENSSSCG00000010644
ENSG00000198924
DNA cross-link repair 1A
Tissue enhanced
Detected in all
heart:
25.9
DCLRE1B
ENSSSCG00000006761
ENSG00000118655
DNA cross-link repair 1B
Low tissue specificity
Detected in all
DCLRE1C
ENSSSCG00000011049
ENSG00000152457
Protein artemis
Low tissue specificity
Detected in all
DCN
ENSSSCG00000000915
ENSG00000011465
Decorin precursor
Group enriched
Detected in many
cartilage:
321.1
cornea:
591.4
DCP1A
ENSSSCG00000022616
ENSG00000272886
MRNA-decapping enzyme 1A
Low tissue specificity
Detected in all
DCP2
ENSSSCG00000014204
ENSG00000172795
Decapping mRNA 2
Low tissue specificity
Detected in all
DCPS
ENSSSCG00000015231
ENSG00000110063
M7GpppX diphosphatase
Tissue enhanced
Detected in all
male glands:
74.1
DCSTAMP
ENSSSCG00000006043
ENSG00000164935
Dendritic cell-specific transmembrane protein
Low tissue specificity
Detected in all
DCT
ENSSSCG00000009490
ENSG00000080166
L-dopachrome tautomerase
Tissue enhanced
Detected in all
male glands:
23.5
DCTD
ENSSSCG00000015775
ENSG00000129187
DCMP deaminase
Tissue enhanced
Detected in all
male glands:
56.5
DCTN1
ENSSSCG00000008274
ENSG00000204843
Dynactin subunit 1
Low tissue specificity
Detected in all
DCTN2
ENSSSCG00000000444
ENSG00000175203
Dynactin subunit 2
Low tissue specificity
Detected in all
DCTN3
ENSSSCG00000010972
ENSG00000137100
Dynactin subunit 3
Tissue enhanced
Detected in all
lens:
75.2
DCTN5
ENSSSCG00000040943
ENSG00000166847
Dynactin subunit 5
Low tissue specificity
Detected in all
DCTN6
ENSSSCG00000038895
ENSG00000104671
Dynactin subunit 6
Low tissue specificity
Detected in all
DCUN1D1
ENSSSCG00000022783
ENSG00000043093
Defective in cullin neddylation 1 domain containing 1
Low tissue specificity
Detected in all
DCUN1D2
ENSSSCG00000026536
ENSG00000150401
Defective in cullin neddylation 1 domain containing 2
Tissue enhanced
Detected in all
skeletal muscle:
48.5
DCUN1D3
ENSSSCG00000007854
ENSG00000188215
Defective in cullin neddylation 1 domain containing 3
Low tissue specificity
Detected in all
DCUN1D4
ENSSSCG00000008831
ENSG00000109184
Defective in cullin neddylation 1 domain containing 4
Tissue enhanced
Detected in all
brain:
28.6
DCUN1D5
ENSSSCG00000014989
ENSG00000137692
Defective in cullin neddylation 1 domain containing 5
Low tissue specificity
Detected in all
DCX
ENSSSCG00000012585
ENSG00000077279
Doublecortin
Group enriched
Detected in many
brain:
47.7
cartilage:
36.4
DCXR
ENSSSCG00000039873
ENSG00000169738
Dicarbonyl and L-xylulose reductase
Tissue enhanced
Detected in all
thyroid gland:
93.7
DDA1
ENSSSCG00000031251
ENSG00000130311
DET1 and DDB1 associated 1
Low tissue specificity
Detected in all
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDAH2
ENSSSCG00000038514
ENSG00000213722
Dimethylarginine dimethylaminohydrolase 2
Low tissue specificity
Detected in all
DDB1
ENSSSCG00000013094
ENSG00000167986
Damage specific DNA binding protein 1
Low tissue specificity
Detected in all
DDB2
ENSSSCG00000013243
ENSG00000134574
Damage specific DNA binding protein 2
Group enriched
Detected in all
cornea:
24.7
lens:
97.1
DDHD1
ENSSSCG00000005043
ENSG00000100523
DDHD domain containing 1
Tissue enhanced
Detected in all
male glands:
62.1
DDHD2
ENSSSCG00000015818
ENSG00000085788
DDHD domain containing 2
Tissue enhanced
Detected in all
brain:
52.4
DDI1
ENSSSCG00000014995
ENSG00000170967
DNA damage inducible 1 homolog 1
Tissue enriched
Detected in many
testis:
57.0
DDIAS
ENSSSCG00000014898
ENSG00000165490
DNA damage induced apoptosis suppressor
Low tissue specificity
Detected in all
DDIT3
ENSSSCG00000040751
ENSG00000175197
DNA damage-inducible transcript 3 protein
Low tissue specificity
Detected in all
DDIT4
ENSSSCG00000031888
ENSG00000168209
DNA damage-inducible transcript 4 protein
Tissue enriched
Detected in all
cartilage:
191.5
DDIT4L
ENSSSCG00000025240
ENSG00000145358
DNA damage inducible transcript 4 like
Tissue enhanced
Detected in many
choroid plexus:
36.4
heart:
41.4
mesothelial tissue:
47.4
skeletal muscle:
43.1
DDOST
ENSSSCG00000003505
ENSG00000244038
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit precursor
Low tissue specificity
Detected in all
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