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Human disease related genes
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CPSF6
ENSSSCG00000038031
ENSG00000111605
Cleavage and polyadenylation specificity factor subunit 6
Low tissue specificity
Detected in all
CPSF7
ENSSSCG00000013083
ENSG00000149532
Cleavage and polyadenylation specific factor 7
Low tissue specificity
Detected in all
CPT1A
ENSSSCG00000012880
ENSG00000110090
Carnitine O-palmitoyltransferase 1, liver isoform
Low tissue specificity
Detected in all
CPT1B
ENSSSCG00000022364
ENSG00000205560
Carnitine O-palmitoyltransferase 1, muscle isoform
Tissue enhanced
Detected in many
heart:
80.4
skeletal muscle:
38.4
CPT1C
ENSSSCG00000024872
ENSG00000169169
Carnitine palmitoyltransferase 1C
Tissue enhanced
Detected in many
brain:
21.3
pineal gland:
14.5
CPT2
ENSSSCG00000003851
ENSG00000157184
Carnitine O-palmitoyltransferase 2, mitochondrial precursor
Low tissue specificity
Detected in all
CPVL
ENSSSCG00000016688
ENSG00000106066
Carboxypeptidase, vitellogenic like
Tissue enhanced
Detected in many
male glands:
19.8
thyroid gland:
64.3
CPXM1
ENSSSCG00000007170
ENSG00000088882
Carboxypeptidase X, M14 family member 1
Tissue enhanced
Detected in many
cartilage:
29.8
CPXM2
ENSSSCG00000010728
ENSG00000121898
Carboxypeptidase X, M14 family member 2
Tissue enhanced
Detected in all
cornea:
87.2
CRACR2B
ENSSSCG00000023933
ENSG00000177685
EF-hand calcium-binding domain-containing protein 4A
Tissue enhanced
Detected in many
male glands:
58.9
salivary gland:
73.0
CRADD
ENSSSCG00000000910
ENSG00000169372
Suppressor of cytokine signaling 2
Low tissue specificity
Detected in all
CRAMP1
ENSSSCG00000008026
ENSG00000007545
Cramped chromatin regulator homolog 1
Low tissue specificity
Detected in all
CRAT
ENSSSCG00000005671
ENSG00000095321
Carnitine O-acetyltransferase
Tissue enhanced
Detected in all
skeletal muscle:
122.7
CRB1
ENSSSCG00000021897
ENSG00000134376
Crumbs 1, cell polarity complex component
Tissue enriched
Detected in some
retina:
41.3
CRB3
ENSSSCG00000013547
ENSG00000130545
Crumbs 3, cell polarity complex component
Tissue enhanced
Detected in many
large intestine:
8.2
male glands:
11.3
stomach:
9.7
CRBN
ENSSSCG00000011530
ENSG00000113851
Cereblon
Tissue enhanced
Detected in all
lens:
55.5
CRCP
ENSSSCG00000032119
ENSG00000241258
CGRP receptor component
Low tissue specificity
Detected in all
CREB1
ENSSSCG00000034395
ENSG00000118260
CAMP responsive element binding protein 1
Low tissue specificity
Detected in all
CREB3
ENSSSCG00000005318
ENSG00000107175
Cyclic AMP-responsive element-binding protein 3
Tissue enriched
Detected in all
male glands:
104.0
CREB3L1
ENSSSCG00000013263
ENSG00000157613
CAMP responsive element binding protein 3 like 1
Tissue enhanced
Detected in all
esophagus:
81.9
male glands:
132.0
salivary gland:
90.7
stomach:
87.6
CREB3L2
ENSSSCG00000016520
ENSG00000182158
CAMP responsive element binding protein 3 like 2
Tissue enhanced
Detected in all
cartilage:
77.8
CREB3L4
ENSSSCG00000006560
ENSG00000143578
Cyclic AMP-responsive element-binding protein 3-like protein 4
Tissue enhanced
Detected in all
male glands:
52.6
CREB5
ENSSSCG00000016690
ENSG00000146592
CAMP responsive element binding protein 5
Tissue enhanced
Detected in many
cartilage:
153.5
synovial tissue:
46.5
CREBBP
ENSSSCG00000007951
ENSG00000005339
CREB binding protein
Low tissue specificity
Detected in all
CREBL2
ENSSSCG00000034418
ENSG00000111269
CAMP responsive element binding protein like 2
Low tissue specificity
Detected in all
CREBRF
ENSSSCG00000016986
ENSG00000164463
CREB3 regulatory factor
Low tissue specificity
Detected in all
CREBZF
ENSSSCG00000014907
ENSG00000137504
CREB/ATF bZIP transcription factor
Low tissue specificity
Detected in all
CREG1
ENSSSCG00000006308
ENSG00000143162
Cellular repressor of E1A stimulated genes 1
Tissue enhanced
Detected in all
male glands:
80.5
testis:
86.7
CRELD1
ENSSSCG00000011560
ENSG00000163703
Cysteine rich with EGF like domains 1
Low tissue specificity
Detected in all
CRELD2
ENSSSCG00000000981
ENSG00000184164
Cysteine rich with EGF like domains 2
Tissue enhanced
Detected in many
epididymis:
37.6
CREM
ENSSSCG00000011106
ENSG00000095794
CAMP responsive element modulator
Tissue enriched
Detected in all
testis:
83.2
CRHBP
ENSSSCG00000014093
ENSG00000145708
Corticotropin-releasing factor-binding protein precursor
Tissue enriched
Detected in all
brain:
22.3
CRHR2
ENSSSCG00000033514
ENSG00000106113
Corticotropin-releasing factor receptor 2
Low tissue specificity
Detected in all
CRIM1
ENSSSCG00000008504
ENSG00000150938
Cysteine rich transmembrane BMP regulator 1
Tissue enhanced
Detected in all
cartilage:
107.8
lens:
90.0
CRIP2
ENSSSCG00000038713
ENSG00000182809
Cysteine rich protein 2
Tissue enhanced
Detected in all
heart:
157.2
CRIPT
ENSSSCG00000039935
ENSG00000119878
CXXC repeat containing interactor of PDZ3 domain
Low tissue specificity
Detected in all
CRISP1
ENSSSCG00000001739
ENSG00000124812
Cysteine-rich secretory protein 1 precursor
Group enriched
Detected in all
ductus deferens:
38.4
epididymis:
73.0
CRISPLD1
ENSSSCG00000006171
ENSG00000121005
Cysteine rich secretory protein LCCL domain containing 1
Group enriched
Detected in many
cartilage:
26.9
cornea:
12.9
dura mater:
44.0
CRISPLD2
ENSSSCG00000002669
ENSG00000103196
Cysteine rich secretory protein LCCL domain containing 2
Tissue enhanced
Detected in many
cartilage:
64.7
CRK
ENSSSCG00000033812
ENSG00000167193
Adapter molecule crk
Low tissue specificity
Detected in all
CRKL
ENSSSCG00000010095
ENSG00000099942
CRK like proto-oncogene, adaptor protein
Low tissue specificity
Detected in all
CRLF3
ENSSSCG00000017743
ENSG00000176390
Cytokine receptor-like factor 3
Tissue enhanced
Detected in all
lymphoid tissue:
57.9
CRLS1
ENSSSCG00000040202
ENSG00000088766
Cardiolipin synthase 1
Low tissue specificity
Detected in all
CRNKL1
ENSSSCG00000038587
ENSG00000101343
Crooked neck pre-mRNA splicing factor 1
Low tissue specificity
Detected in all
CRNN
ENSSSCG00000006604
ENSG00000143536
Cornulin
Tissue enriched
Detected in all
mouth:
102.2
CROCC2
ENSSSCG00000036261
ENSG00000226321
Ciliary rootlet coiled-coil, rootletin family member 2
Tissue enhanced
Detected in many
adipose tissue:
27.6
fallopian tube:
21.7
lung:
13.6
upper respiratory system:
16.7
CROT
ENSSSCG00000015391
ENSG00000005469
Peroxisomal carnitine O-octanoyltransferase
Tissue enriched
Detected in all
liver:
89.6
CRP
ENSSSCG00000006403
ENSG00000132693
C-reactive protein precursor
Tissue enhanced
Detected in all
liver:
48.4
CRTAM
ENSSSCG00000015137
ENSG00000109943
Cytotoxic and regulatory T cell molecule
Tissue enhanced
Detected in all
brain:
25.1
CRTAP
ENSSSCG00000039054
ENSG00000170275
Cartilage associated protein
Low tissue specificity
Detected in all
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