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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CD93
ENSSSCG00000007116
ENSG00000125810
CD93 molecule
Low tissue specificity
Detected in many
CD96
ENSSSCG00000023993
ENSG00000153283
T-cell surface protein tactile
Tissue enhanced
Detected in many
large intestine:
22.3
lymphoid tissue:
27.2
CD99
ENSSSCG00000039894
ENSG00000002586
CD99 molecule (Xg blood group)
Low tissue specificity
Detected in all
CD99L2
ENSSSCG00000012744
ENSG00000102181
CD99 molecule like 2
Tissue enhanced
Detected in all
lens:
50.5
CDA
ENSSSCG00000021259
ENSG00000158825
Cytidine deaminase
Tissue enhanced
Detected in many
cartilage:
51.0
male glands:
51.9
CDADC1
ENSSSCG00000031598
ENSG00000102543
Cytidine and dCMP deaminase domain containing 1
Low tissue specificity
Detected in all
CDAN1
ENSSSCG00000004719
ENSG00000140326
Codanin 1
Low tissue specificity
Detected in all
CDC123
ENSSSCG00000011112
ENSG00000151465
Cell division cycle protein 123 homolog
Tissue enhanced
Detected in all
pineal gland:
57.3
CDC14A
ENSSSCG00000006864
ENSG00000079335
Cell division cycle 14A
Low tissue specificity
Detected in all
CDC14B
ENSSSCG00000027557
ENSG00000081377
Cell division cycle 14B
Low tissue specificity
Detected in all
CDC16
ENSSSCG00000020899
ENSG00000130177
Cell division cycle protein 16 homolog
Low tissue specificity
Detected in all
CDC20
ENSSSCG00000003949
ENSG00000117399
Cell division cycle protein 20 homolog
Tissue enhanced
Detected in many
testis:
33.1
CDC23
ENSSSCG00000014325
ENSG00000094880
Cell division cycle protein 23 homolog
Low tissue specificity
Detected in all
CDC25A
ENSSSCG00000021494
ENSG00000164045
Cell division cycle 25A
Low tissue specificity
Detected in all
CDC25B
ENSSSCG00000007151
ENSG00000101224
M-phase inducer phosphatase 2
Tissue enhanced
Detected in many
lymphoid tissue:
46.1
stomach:
54.1
CDC25C
ENSSSCG00000014329
ENSG00000158402
M-phase inducer phosphatase 3
Tissue enhanced
Detected in many
testis:
29.3
CDC26
ENSSSCG00000033177
ENSG00000176386
Cell division cycle 26
Low tissue specificity
Detected in all
CDC27
ENSSSCG00000017308
ENSG00000004897
Cell division cycle 27
Low tissue specificity
Detected in all
CDC34
ENSSSCG00000039640
ENSG00000099804
Cell division cycle 34
Tissue enhanced
Detected in all
lens:
142.6
skeletal muscle:
116.2
CDC37
ENSSSCG00000013647
ENSG00000105401
Hsp90 co-chaperone Cdc37
Low tissue specificity
Detected in all
CDC37L1
ENSSSCG00000005219
ENSG00000106993
Cell division cycle 37 like 1
Low tissue specificity
Detected in all
CDC40
ENSSSCG00000004403
ENSG00000168438
Cell division cycle 40
Low tissue specificity
Detected in all
CDC42BPA
ENSSSCG00000010862
ENSG00000143776
CDC42 binding protein kinase alpha
Low tissue specificity
Detected in all
CDC42BPB
ENSSSCG00000002523
ENSG00000198752
CDC42 binding protein kinase beta
Low tissue specificity
Detected in all
CDC42BPG
ENSSSCG00000013018
ENSG00000171219
CDC42 binding protein kinase gamma
Low tissue specificity
Detected in many
CDC42EP1
ENSSSCG00000026108
ENSG00000128283
CDC42 effector protein 1
Low tissue specificity
Detected in many
CDC42EP2
ENSSSCG00000012996
ENSG00000149798
CDC42 effector protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
68.1
CDC42EP3
ENSSSCG00000021359
ENSG00000163171
CDC42 effector protein 3
Low tissue specificity
Detected in all
CDC42EP4
ENSSSCG00000017245
ENSG00000179604
CDC42 effector protein 4
Low tissue specificity
Detected in all
CDC42EP5
ENSSSCG00000039922
ENSG00000167617
CDC42 effector protein 5
Tissue enhanced
Detected in many
male glands:
165.6
CDC42SE1
ENSSSCG00000031881
ENSG00000197622
CDC42 small effector protein 1
Low tissue specificity
Detected in all
CDC42SE2
ENSSSCG00000036686
ENSG00000158985
CDC42 small effector 2
Low tissue specificity
Detected in all
CDC45
ENSSSCG00000010122
ENSG00000093009
Cell division cycle 45
Tissue enhanced
Detected in many
cartilage:
31.2
CDC5L
ENSSSCG00000001708
ENSG00000096401
Cell division cycle 5 like
Low tissue specificity
Detected in all
CDC6
ENSSSCG00000017471
ENSG00000094804
Cell division cycle 6
Tissue enhanced
Detected in all
lymphoid tissue:
19.7
CDC7
ENSSSCG00000027251
ENSG00000097046
Cell division cycle 7
Low tissue specificity
Detected in all
CDC73
ENSSSCG00000010801
ENSG00000134371
Cell division cycle 73
Low tissue specificity
Detected in all
CDCA2
ENSSSCG00000009653
ENSG00000184661
Cell division cycle associated 2
Group enriched
Detected in many
lymphoid tissue:
14.7
testis:
44.3
CDCA3
ENSSSCG00000000683
ENSG00000111665
Cell division cycle associated 3
Low tissue specificity
Detected in all
CDCA4
ENSSSCG00000002559
ENSG00000170779
Cell division cycle associated 4
Low tissue specificity
Detected in many
CDCA5
ENSSSCG00000013008
ENSG00000146670
Cell division cycle associated 5
Low tissue specificity
Detected in all
CDCA7
ENSSSCG00000015961
ENSG00000144354
Cell division cycle associated 7
Tissue enhanced
Detected in all
lymphoid tissue:
34.3
CDCA7L
ENSSSCG00000015380
ENSG00000164649
Cell division cycle associated 7 like
Tissue enhanced
Detected in many
lymphoid tissue:
46.9
CDCP1
ENSSSCG00000011298
ENSG00000163814
CUB domain containing protein 1
Low tissue specificity
Detected in many
CDCP2
ENSSSCG00000030538
ENSG00000157211
CUB domain containing protein 2
Low tissue specificity
Detected in many
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDH11
ENSSSCG00000002795
ENSG00000140937
Cadherin-11 preproprotein
Tissue enhanced
Detected in many
dura mater:
51.5
CDH12
ENSSSCG00000016799
ENSG00000154162
Cadherin 12
Tissue enhanced
Detected in some
brain:
18.4
retina:
9.4
smooth muscle:
9.5
CDH13
ENSSSCG00000002684
ENSG00000140945
Cadherin-13 precursor
Tissue enhanced
Detected in many
cartilage:
105.0
heart:
54.6
synovial tissue:
58.9
CDH15
ENSSSCG00000002642
ENSG00000129910
Cadherin 15
Tissue enhanced
Detected in many
brain:
17.2
skeletal muscle:
19.1
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