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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
BECN1
ENSSSCG00000017386
ENSG00000126581
Beclin-1
Low tissue specificity
Detected in all
BEND3
ENSSSCG00000031159
ENSG00000178409
BEN domain containing 3
Low tissue specificity
Detected in all
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
BEND6
ENSSSCG00000001498
ENSG00000151917
BEN domain containing 6
Low tissue specificity
Detected in all
BEND7
ENSSSCG00000032984
ENSG00000165626
BEN domain containing 7
Low tissue specificity
Detected in all
BEST2
ENSSSCG00000013733
ENSG00000039987
Bestrophin 2
Tissue enhanced
Detected in many
breast:
10.9
BEST3
ENSSSCG00000000499
ENSG00000127325
Bestrophin 3
Group enriched
Detected in many
male glands:
16.0
mouth:
15.6
skeletal muscle:
37.6
BEST4
ENSSSCG00000003929
ENSG00000142959
Bestrophin 4
Low tissue specificity
Detected in all
BET1L
ENSSSCG00000014556
ENSG00000177951
Bet1 golgi vesicular membrane trafficking protein like
Low tissue specificity
Detected in all
BEX1
ENSSSCG00000012525
Brain expressed, X-linked 1
Group enriched
Detected in many
brain:
54.7
pineal gland:
101.4
pituitary gland:
65.2
BEX3
ENSSSCG00000012528
ENSG00000166681
Protein BEX3 isoform a
Tissue enhanced
Detected in many
brain:
49.3
lens:
53.2
pineal gland:
49.5
pituitary gland:
57.4
BEX4
ENSSSCG00000022635
ENSG00000102409
Brain expressed X-linked 4
Tissue enhanced
Detected in all
ductus deferens:
44.6
pineal gland:
60.6
pituitary gland:
54.8
BEX5
ENSSSCG00000012514
ENSG00000184515
Brain expressed X-linked 5
Tissue enhanced
Detected in some
brain:
15.5
epididymis:
16.7
pineal gland:
13.7
pituitary gland:
42.9
BGN
ENSSSCG00000012766
ENSG00000182492
Biglycan
Tissue enhanced
Detected in many
cartilage:
481.4
synovial tissue:
137.3
BHLHA9
ENSSSCG00000017802
ENSG00000205899
Basic helix-loop-helix family member a9
Group enriched
Detected in some
adipose tissue:
16.9
bone marrow:
5.3
BHLHB9
ENSSSCG00000012520
ENSG00000198908
Basic helix-loop-helix family member b9
Tissue enhanced
Detected in many
brain:
43.7
lens:
21.6
pituitary gland:
44.8
BHLHE40
ENSSSCG00000036136
ENSG00000134107
Class E basic helix-loop-helix protein 40
Tissue enhanced
Detected in all
cartilage:
156.2
synovial tissue:
70.3
BHLHE41
ENSSSCG00000028552
ENSG00000123095
Basic helix-loop-helix family member e41
Tissue enhanced
Detected in many
cartilage:
94.7
BICC1
ENSSSCG00000010204
ENSG00000122870
BicC family RNA binding protein 1
Tissue enhanced
Detected in all
mesothelial tissue:
46.6
BICD1
ENSSSCG00000000531
ENSG00000151746
BICD cargo adaptor 1
Tissue enhanced
Detected in many
brain:
42.1
BICD2
ENSSSCG00000027166
ENSG00000185963
BICD cargo adaptor 2
Low tissue specificity
Detected in all
BICDL1
ENSSSCG00000009896
ENSG00000135127
BICD family like cargo adaptor 1
Tissue enhanced
Detected in many
epididymis:
91.2
mesothelial tissue:
29.5
BICDL2
ENSSSCG00000020895
ENSG00000162069
BICD family like cargo adaptor 2
Low tissue specificity
Detected in all
BICRA
ENSSSCG00000022302
ENSG00000063169
BRD4 interacting chromatin remodeling complex associated protein
Low tissue specificity
Detected in all
BICRAL
ENSSSCG00000001646
ENSG00000112624
BRD4 interacting chromatin remodeling complex associated protein like
Low tissue specificity
Detected in all
BID
ENSSSCG00000000769
ENSG00000015475
BH3-interacting domain death agonist
Low tissue specificity
Detected in all
BIN1
ENSSSCG00000015720
ENSG00000136717
Myc box-dependent-interacting protein 1
Tissue enhanced
Detected in all
brain:
87.5
skeletal muscle:
140.3
BIN2
ENSSSCG00000000223
ENSG00000110934
Bridging integrator 2
Tissue enhanced
Detected in many
lymphoid tissue:
76.0
testis:
27.2
BIN3
ENSSSCG00000009629
ENSG00000147439
Bridging integrator 3
Low tissue specificity
Detected in all
BIRC3
ENSSSCG00000027529
ENSG00000023445
Baculoviral IAP repeat containing 3
Low tissue specificity
Detected in all
BIRC5
ENSSSCG00000040486
ENSG00000089685
Baculoviral IAP repeat-containing protein 5
Tissue enhanced
Detected in many
lymphoid tissue:
20.5
testis:
43.3
BIRC6
ENSSSCG00000008513
ENSG00000115760
Baculoviral IAP repeat containing 6
Low tissue specificity
Detected in all
BIVM
ENSSSCG00000009534
ENSG00000134897
Basic immunoglobulin-like variable motif-containing protein
Low tissue specificity
Detected in all
BLK
ENSSSCG00000027568
ENSG00000136573
BLK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
stomach:
14.4
upper respiratory system:
14.3
BLM
ENSSSCG00000001816
ENSG00000197299
Bloom syndrome protein
Tissue enhanced
Detected in all
epididymis:
26.5
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
BLOC1S2
ENSSSCG00000010551
ENSG00000196072
Biogenesis of lysosomal organelles complex 1 subunit 2
Low tissue specificity
Detected in all
BLOC1S4
ENSSSCG00000030673
ENSG00000186222
Biogenesis of lysosomal organelles complex 1 subunit 4
Low tissue specificity
Detected in all
BLOC1S5
ENSSSCG00000040593
ENSG00000188428
Biogenesis of lysosome-related organelles complex 1 subunit 5
Low tissue specificity
Detected in all
BLOC1S6
ENSSSCG00000037384
ENSG00000104164
Biogenesis of lysosome-related organelles complex 1 subunit 6
Low tissue specificity
Detected in all
BLVRA
ENSSSCG00000016756
ENSG00000106605
Biliverdin reductase A
Low tissue specificity
Detected in all
BLVRB
ENSSSCG00000021067
ENSG00000090013
Biliverdin reductase B
Tissue enhanced
Detected in all
liver:
74.6
lymphoid tissue:
67.8
BLZF1
ENSSSCG00000022396
ENSG00000117475
Basic leucine zipper nuclear factor 1
Low tissue specificity
Detected in all
BMF
ENSSSCG00000035284
ENSG00000104081
Bcl2 modifying factor
Low tissue specificity
Detected in all
BMP1
ENSSSCG00000009620
ENSG00000168487
Bone morphogenetic protein 1
Tissue enhanced
Detected in many
cartilage:
47.6
ovary:
59.8
BMP10
ENSSSCG00000032071
ENSG00000163217
Bone morphogenetic protein 10
Low tissue specificity
Detected in all
BMP2K
ENSSSCG00000027722
ENSG00000138756
BMP2 inducible kinase
Low tissue specificity
Detected in all
BMP3
ENSSSCG00000029061
ENSG00000152785
Bone morphogenetic protein 3 precursor
Tissue enhanced
Detected in many
adipose tissue:
20.6
mesothelial tissue:
31.4
BMP4
ENSSSCG00000005045
ENSG00000125378
Bone morphogenetic protein 4 precursor
Low tissue specificity
Detected in many
BMP6
ENSSSCG00000001027
ENSG00000153162
Bone morphogenetic protein 6 precursor
Tissue enriched
Detected in many
cartilage:
84.5
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