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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000012627
Tissue enhanced
Detected in many
kidney:
12.2
testis:
12.3
na
ENSSSCG00000012640
ENSG00000151422
Low tissue specificity
Detected in all
na
ENSSSCG00000012645
Tissue enhanced
Detected in some
brain:
5.2
ductus deferens:
15.6
epididymis:
17.3
male glands:
6.0
na
ENSSSCG00000012654
ENSG00000156697,ENSG00000253797
Low tissue specificity
Detected in all
na
ENSSSCG00000012686
ENSG00000101928
Motile sperm domain-containing protein 1
Tissue enhanced
Detected in all
choroid plexus:
44.7
male glands:
52.0
na
ENSSSCG00000012693
ENSG00000169551
Low tissue specificity
Detected in all
na
ENSSSCG00000012695
Low tissue specificity
Detected in all
na
ENSSSCG00000012699
Four and a half LIM domains protein 1
Tissue enhanced
Detected in many
skeletal muscle:
443.8
na
ENSSSCG00000012700
ENSG00000129680
Tissue enhanced
Detected in all
heart:
36.3
na
ENSSSCG00000012731
ENSG00000010404
Low tissue specificity
Detected in all
na
ENSSSCG00000012746
ENSG00000160131
Low tissue specificity
Detected in all
na
ENSSSCG00000012757
ENSG00000147400
Low tissue specificity
Detected in all
na
ENSSSCG00000012767
ENSG00000213397
Low tissue specificity
Detected in all
na
ENSSSCG00000012811
Prefoldin subunit 3
Low tissue specificity
Detected in all
na
ENSSSCG00000012812
Tissue enriched
Detected in many
testis:
23.7
na
ENSSSCG00000012832
ENSG00000101825
Tissue enhanced
Detected in many
cartilage:
89.1
na
ENSSSCG00000012833
Low tissue specificity
Detected in all
na
ENSSSCG00000012882
ENSG00000132749
Tissue enriched
Detected in some
testis:
115.1
na
ENSSSCG00000012886
ENSG00000171067
Low tissue specificity
Detected in all
na
ENSSSCG00000012895
Group enriched
Detected in many
brain:
43.1
heart:
42.7
na
ENSSSCG00000012916
ENSG00000175482,ENSG00000256514
Low tissue specificity
Detected in all
na
ENSSSCG00000012961
Low tissue specificity
Detected in all
na
ENSSSCG00000012977
ENSG00000142541
Tissue enhanced
Detected in many
kidney:
22.8
male glands:
16.2
testis:
14.9
na
ENSSSCG00000012984
ENSG00000142186
Low tissue specificity
Detected in all
na
ENSSSCG00000013038
ENSG00000110011
Low tissue specificity
Detected in all
na
ENSSSCG00000013042
ENSG00000168071
Tissue enhanced
Detected in many
stomach:
19.9
na
ENSSSCG00000013046
ENSG00000176340
Low tissue specificity
Detected in all
na
ENSSSCG00000013051
Tissue enhanced
Detected in many
epididymis:
11.3
na
ENSSSCG00000013052
ENSG00000133318
Tissue enhanced
Detected in all
brain:
84.1
na
ENSSSCG00000013063
ENSG00000149016
Low tissue specificity
Detected in all
na
ENSSSCG00000013064
Tissue enhanced
Detected in all
lens:
356.3
na
ENSSSCG00000013100
Tissue enhanced
Detected in all
liver:
48.0
na
ENSSSCG00000013155
ENSG00000186660
Low tissue specificity
Detected in all
na
ENSSSCG00000013173
Low tissue specificity
Detected in many
na
ENSSSCG00000013232
ENSG00000109919
Low tissue specificity
Detected in all
na
ENSSSCG00000013315
ENSG00000149100
Low tissue specificity
Detected in all
na
ENSSSCG00000013318
ENSG00000049449,ENSG00000285283
Tissue enhanced
Detected in all
epididymis:
145.7
na
ENSSSCG00000013322
ENSG00000148950
Mitochondrial inner membrane protease subunit 1
Tissue enhanced
Detected in all
lens:
36.1
na
ENSSSCG00000013324
Tissue enhanced
Detected in many
fallopian tube:
41.4
na
ENSSSCG00000013366
L-lactate dehydrogenase A chain
Group enriched
Detected in many
cornea:
239.2
skeletal muscle:
236.9
na
ENSSSCG00000013380
ENSG00000070081
Tissue enhanced
Detected in many
epididymis:
33.8
male glands:
39.6
pituitary gland:
36.4
salivary gland:
61.6
na
ENSSSCG00000013386
ENSG00000175868
Calcitonin receptor-stimulating peptide 3
Low tissue specificity
Detected in all
na
ENSSSCG00000013391
Tissue enhanced
Detected in all
lens:
58.2
na
ENSSSCG00000013395
ENSG00000148925
Low tissue specificity
Detected in all
na
ENSSSCG00000013405
ENSG00000110321
Low tissue specificity
Detected in all
na
ENSSSCG00000013411
ENSG00000166483
Tissue enhanced
Detected in all
lens:
30.5
na
ENSSSCG00000013412
Tissue enriched
Detected in some
testis:
25.3
na
ENSSSCG00000013413
Tissue enhanced
Detected in many
male glands:
15.0
testis:
29.4
na
ENSSSCG00000013421
Low tissue specificity
Detected in all
na
ENSSSCG00000013434
ENSG00000185988
Tissue enhanced
Detected in all
brain:
25.9
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