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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000007221
Group enriched
Detected in some
epididymis:
34.6
lens:
22.6
testis:
69.8
na
ENSSSCG00000007224
Preprobeta-defensin 108-like
Group enriched
Detected in some
ductus deferens:
27.2
epididymis:
7.7
na
ENSSSCG00000007253
ENSG00000101367
Microtubule-associated protein RP/EB family member 1
Low tissue specificity
Detected in all
na
ENSSSCG00000007263
Tissue enriched
Detected in many
upper respiratory system:
59.7
na
ENSSSCG00000007264
ENSG00000101400
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
42.7
na
ENSSSCG00000007307
ENSG00000244005
Cysteine desulfurase, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000007314
ENSG00000088367
Tissue enhanced
Detected in all
lens:
57.2
na
ENSSSCG00000007322
ENSG00000101079
Tissue enhanced
Detected in all
brain:
46.3
pineal gland:
65.1
retina:
38.4
na
ENSSSCG00000007369
Tissue enhanced
Detected in many
heart:
56.9
skeletal muscle:
52.8
smooth muscle:
46.8
na
ENSSSCG00000007421
ENSG00000124116
Tissue enhanced
Detected in many
lens:
15.7
testis:
25.9
na
ENSSSCG00000007435
ENSG00000100979
Phospholipid transfer protein precursor
Tissue enhanced
Detected in many
adrenal gland:
223.5
ovary:
87.8
synovial tissue:
57.6
na
ENSSSCG00000007454
Low tissue specificity
Detected in all
na
ENSSSCG00000007493
ENSG00000087586
Aurora kinase A
Tissue enhanced
Detected in many
testis:
42.9
na
ENSSSCG00000007512
Low tissue specificity
Detected in all
na
ENSSSCG00000007516
ENSG00000124222
Syntaxin-16
Low tissue specificity
Detected in all
na
ENSSSCG00000007525
ENSG00000101166
PRELI domain containing protein 3B
Low tissue specificity
Detected in all
na
ENSSSCG00000007527
ENSG00000124205
Endothelin-3
Tissue enhanced
Detected in all
cornea:
48.1
na
ENSSSCG00000007552
Low tissue specificity
Detected in many
na
ENSSSCG00000007578
ENSG00000136297
Group enriched
Detected in some
brain:
16.9
epididymis:
64.8
na
ENSSSCG00000007589
ENSG00000155026
Tissue enhanced
Detected in many
lens:
24.6
testis:
40.1
na
ENSSSCG00000007596
ENSG00000122543,ENSG00000135175
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
upper respiratory system:
10.8
na
ENSSSCG00000007609
Actin-related protein 2/3 complex subunit 1A
Low tissue specificity
Detected in all
na
ENSSSCG00000007622
ENSG00000106246,ENSG00000248919
Low tissue specificity
Detected in all
na
ENSSSCG00000007642
ENSG00000160862
Tissue enhanced
Detected in many
liver:
107.9
male glands:
63.8
salivary gland:
37.7
na
ENSSSCG00000007645
Tissue enhanced
Detected in some
choroid plexus:
11.6
na
ENSSSCG00000007665
Tissue enhanced
Detected in many
mesothelial tissue:
17.3
na
ENSSSCG00000007692
ENSG00000170027
Tissue enhanced
Detected in all
brain:
70.0
na
ENSSSCG00000007705
Low tissue specificity
Detected in all
na
ENSSSCG00000007719
ENSG00000106665
Tissue enhanced
Detected in many
lens:
82.7
na
ENSSSCG00000007733
ENSG00000198874,ENSG00000277149
Low tissue specificity
Detected in all
na
ENSSSCG00000007735
ENSG00000154710
Low tissue specificity
Detected in all
na
ENSSSCG00000007738
ENSG00000126522
Tissue enhanced
Detected in all
liver:
49.8
na
ENSSSCG00000007743
ENSG00000106153
Low tissue specificity
Detected in all
na
ENSSSCG00000007749
Low tissue specificity
Detected in all
na
ENSSSCG00000007789
ENSG00000080603
Low tissue specificity
Detected in all
na
ENSSSCG00000007795
ENSG00000179958
Tissue enhanced
Detected in all
liver:
55.5
na
ENSSSCG00000007826
Low tissue specificity
Detected in all
na
ENSSSCG00000007848
Group enriched
Detected in some
fallopian tube:
21.2
testis:
47.6
na
ENSSSCG00000007858
ENSG00000066813,ENSG00000183747
Group enriched
Detected in all
kidney:
99.1
liver:
28.1
na
ENSSSCG00000007874
ENSG00000103222
Tissue enhanced
Detected in all
male glands:
50.7
na
ENSSSCG00000007899
ENSG00000188897
Tissue enhanced
Detected in some
skin:
8.4
na
ENSSSCG00000007919
ENSG00000033011
Low tissue specificity
Detected in all
na
ENSSSCG00000007920
ENSG00000118894,ENSG00000145002,ENSG00000186523
Low tissue specificity
Detected in all
na
ENSSSCG00000007921
Low tissue specificity
Detected in many
na
ENSSSCG00000007935
ENSG00000166246
Tissue enriched
Detected in many
testis:
66.6
na
ENSSSCG00000007940
ENSG00000205832
Tissue enhanced
Detected in all
testis:
29.9
na
ENSSSCG00000007944
ENSG00000103426,ENSG00000262246
Low tissue specificity
Detected in all
na
ENSSSCG00000007947
Low tissue specificity
Detected in all
na
ENSSSCG00000007964
ENSG00000103313
Low tissue specificity
Detected in all
na
ENSSSCG00000007970
ENSG00000161980
Tissue enhanced
Detected in all
male glands:
37.9
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