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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MED14
ENSSSCG00000012250
ENSG00000180182
Mediator complex subunit 14
Low tissue specificity
Detected in all
MED15
ENSSSCG00000010107
ENSG00000099917
Mediator complex subunit 15
Low tissue specificity
Detected in all
MED16
ENSSSCG00000013416
ENSG00000175221
Mediator complex subunit 16
Low tissue specificity
Detected in all
MED19
ENSSSCG00000013177
ENSG00000156603
Mediator complex subunit 19
Low tissue specificity
Detected in all
MED20
ENSSSCG00000038520
ENSG00000124641
Mediator of RNA polymerase II transcription subunit 20
Low tissue specificity
Detected in all
MED21
ENSSSCG00000000552
ENSG00000152944
Mediator of RNA polymerase II transcription subunit 21
Low tissue specificity
Detected in all
MED22
ENSSSCG00000031941
ENSG00000148297
Mediator complex subunit 22
Low tissue specificity
Detected in all
MED23
ENSSSCG00000004196
ENSG00000112282
Mediator complex subunit 23
Low tissue specificity
Detected in all
MED24
ENSSSCG00000029102
ENSG00000008838
Mediator complex subunit 24
Low tissue specificity
Detected in all
MED25
ENSSSCG00000003197
ENSG00000104973
Mediator complex subunit 25
Low tissue specificity
Detected in all
MED27
ENSSSCG00000005720
ENSG00000160563
Mediator of RNA polymerase II transcription subunit 27
Low tissue specificity
Detected in all
MED28
ENSSSCG00000029989
ENSG00000118579
Mediator of RNA polymerase II transcription subunit 28
Low tissue specificity
Detected in all
MED30
ENSSSCG00000033577
ENSG00000164758
Mediator complex subunit 30
Low tissue specificity
Detected in all
MED31
ENSSSCG00000027100
ENSG00000108590
Mediator complex subunit 31
Low tissue specificity
Detected in all
MED4
ENSSSCG00000035098
ENSG00000136146
Mediator complex subunit 4
Low tissue specificity
Detected in all
MED6
ENSSSCG00000034290
ENSG00000133997
Mediator complex subunit 6
Low tissue specificity
Detected in all
MED7
ENSSSCG00000017058
ENSG00000155868
Mediator of RNA polymerase II transcription subunit 7
Low tissue specificity
Detected in all
MED8
ENSSSCG00000003943
ENSG00000159479
Mediator complex subunit 8
Low tissue specificity
Detected in all
MED9
ENSSSCG00000018053
ENSG00000141026
Mediator complex subunit 9
Low tissue specificity
Detected in all
MEF2A
ENSSSCG00000028771
ENSG00000068305
Myocyte-specific enhancer factor 2A isoform 1
Low tissue specificity
Detected in all
MEF2B
ENSSSCG00000030351
ENSG00000213999
Myocyte enhancer factor 2B
Low tissue specificity
Detected in all
MEF2D
ENSSSCG00000006482
ENSG00000116604
Myocyte enhancer factor 2D
Low tissue specificity
Detected in all
MEGF11
ENSSSCG00000004939
ENSG00000157890
Multiple EGF like domains 11
Tissue enriched
Detected in many
brain:
38.2
MEGF6
ENSSSCG00000024678
ENSG00000162591
Multiple EGF like domains 6
Tissue enhanced
Detected in many
mesothelial tissue:
34.2
MEGF8
ENSSSCG00000003021
ENSG00000105429
Multiple EGF like domains 8
Low tissue specificity
Detected in all
MEGF9
ENSSSCG00000005506
ENSG00000106780
Multiple EGF like domains 9
Group enriched
Detected in many
lens:
106.8
retina:
33.9
vagus nerve:
52.2
MEI1
ENSSSCG00000034405
ENSG00000167077
Meiotic double-stranded break formation protein 1
Tissue enhanced
Detected in many
ductus deferens:
23.6
testis:
10.0
MEIG1
ENSSSCG00000034119
ENSG00000197889
Meiosis/spermiogenesis associated 1
Tissue enriched
Detected in many
testis:
49.3
MEIKIN
ENSSSCG00000014271
ENSG00000239642
Meiotic kinetochore factor
Tissue enhanced
Detected in some
adrenal gland:
32.5
epididymis:
18.0
retina:
19.7
testis:
15.9
MEIOB
ENSSSCG00000025711
ENSG00000162039
Meiosis specific with OB domains
Low tissue specificity
Detected in all
MEIS1
ENSSSCG00000039161
ENSG00000143995
Meis homeobox 1
Tissue enhanced
Detected in many
fallopian tube:
45.9
MEIS2
ENSSSCG00000004795
ENSG00000134138
Meis homeobox 2
Tissue enhanced
Detected in many
brain:
76.8
cervix:
58.1
MEIS3
ENSSSCG00000003115
ENSG00000105419
Meis homeobox 3
Tissue enhanced
Detected in many
synovial tissue:
37.9
MELK
ENSSSCG00000005344
ENSG00000165304
Maternal embryonic leucine zipper kinase
Low tissue specificity
Detected in all
MELTF
ENSSSCG00000011837
ENSG00000163975
Melanotransferrin
Group enriched
Detected in some
cartilage:
56.7
cervix:
15.2
testis:
18.7
MEMO1
ENSSSCG00000008515
ENSG00000162959
Protein MEMO1
Low tissue specificity
Detected in all
MEN1
ENSSSCG00000013019
ENSG00000133895
Menin 1
Low tissue specificity
Detected in all
MEOX1
ENSSSCG00000017376
ENSG00000005102
Mesenchyme homeobox 1
Tissue enhanced
Detected in many
mesothelial tissue:
38.0
MEPCE
ENSSSCG00000023680
ENSG00000146834
Methylphosphate capping enzyme
Low tissue specificity
Detected in all
MERTK
ENSSSCG00000008103
ENSG00000153208
MER proto-oncogene, tyrosine kinase
Low tissue specificity
Detected in all
MESD
ENSSSCG00000021587
ENSG00000117899
Mesoderm development LRP chaperone
Low tissue specificity
Detected in all
MESP1
ENSSSCG00000001847
ENSG00000166823
Mesoderm posterior bHLH transcription factor 1
Low tissue specificity
Detected in all
MESP2
ENSSSCG00000001848
ENSG00000188095
Mesoderm posterior bHLH transcription factor 2
Low tissue specificity
Detected in all
MEST
ENSSSCG00000016554
ENSG00000106484
Mesoderm-specific transcript homolog protein precursor
Tissue enhanced
Detected in all
adrenal gland:
35.8
pituitary gland:
86.2
MET
ENSSSCG00000024351
ENSG00000105976
Hepatocyte growth factor receptor
Tissue enhanced
Detected in many
thyroid gland:
33.5
METAP1
ENSSSCG00000009186
ENSG00000164024
Methionyl aminopeptidase 1
Low tissue specificity
Detected in all
METAP1D
ENSSSCG00000015951
ENSG00000172878
Methionyl aminopeptidase type 1D, mitochondrial
Low tissue specificity
Detected in all
METAP2
ENSSSCG00000030608
ENSG00000111142
Methionyl aminopeptidase 2
Low tissue specificity
Detected in all
METRN
ENSSSCG00000008005
ENSG00000103260
Meteorin, glial cell differentiation regulator
Tissue enhanced
Detected in many
brain:
6.4
fallopian tube:
6.1
lung:
6.5
METRNL
ENSSSCG00000017137
ENSG00000176845
Meteorin like, glial cell differentiation regulator
Tissue enhanced
Detected in many
cartilage:
67.1
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