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UMAP gene cluster
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Keyword
Chromosome
1
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8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MARK1
ENSSSCG00000010825
ENSG00000116141
Microtubule affinity regulating kinase 1
Tissue enhanced
Detected in all
lens:
56.0
MARK2
ENSSSCG00000013050
ENSG00000072518
Microtubule affinity regulating kinase 2
Low tissue specificity
Detected in all
MARK3
ENSSSCG00000021669
ENSG00000075413
Microtubule affinity regulating kinase 3
Low tissue specificity
Detected in all
MARK4
ENSSSCG00000022538
ENSG00000007047
Microtubule affinity regulating kinase 4
Low tissue specificity
Detected in all
MARS
ENSSSCG00000023318
ENSG00000166986
Methionyl-tRNA synthetase
Low tissue specificity
Detected in all
MARS2
ENSSSCG00000034494
ENSG00000247626
Methionyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
MARVELD1
ENSSSCG00000010527
ENSG00000155254
MARVEL domain containing 1
Tissue enhanced
Detected in many
cartilage:
74.0
MARVELD2
ENSSSCG00000016959
ENSG00000152939
MARVEL domain-containing protein 2
Tissue enhanced
Detected in all
choroid plexus:
35.8
MARVELD3
ENSSSCG00000002734
ENSG00000140832
MARVEL domain-containing protein 3 isoform 1
Tissue enhanced
Detected in many
thyroid gland:
25.4
MASP1
ENSSSCG00000011806
ENSG00000127241
Mannan-binding lectin serine protease 1 precursor
Group enriched
Detected in many
heart:
26.5
liver:
53.5
MASP2
ENSSSCG00000003410
ENSG00000009724
Mannan-binding lectin serine protease 2 precursor
Group enriched
Detected in all
liver:
45.4
lymphoid tissue:
33.7
MAST1
ENSSSCG00000013732
ENSG00000105613
Microtubule associated serine/threonine kinase 1
Tissue enhanced
Detected in all
brain:
17.3
retina:
13.1
MAST2
ENSSSCG00000003913
ENSG00000086015
Microtubule associated serine/threonine kinase 2
Low tissue specificity
Detected in all
MAST3
ENSSSCG00000013895
ENSG00000099308
Microtubule associated serine/threonine kinase 3
Tissue enhanced
Detected in all
brain:
42.6
MAST4
ENSSSCG00000016956
ENSG00000069020
Microtubule associated serine/threonine kinase family member 4
Tissue enhanced
Detected in all
adrenal gland:
85.9
MASTL
ENSSSCG00000011065
ENSG00000120539
Microtubule associated serine/threonine kinase like
Low tissue specificity
Detected in all
MAT1A
ENSSSCG00000010337
ENSG00000151224
S-adenosylmethionine synthase
Tissue enriched
Detected in some
liver:
229.1
MAT2A
ENSSSCG00000022300
ENSG00000168906
S-adenosylmethionine synthase
Tissue enriched
Detected in all
epididymis:
268.1
MAT2B
ENSSSCG00000021229
ENSG00000038274
Methionine adenosyltransferase 2 subunit beta
Low tissue specificity
Detected in all
MATN2
ENSSSCG00000006082
ENSG00000132561
Matrilin 2
Tissue enhanced
Detected in many
adipose tissue:
49.5
mesothelial tissue:
53.4
MAU2
ENSSSCG00000021664
ENSG00000129933
MAU2 sister chromatid cohesion factor
Low tissue specificity
Detected in all
MAVS
ENSSSCG00000007143
ENSG00000088888
Mitochondrial antiviral-signaling protein
Tissue enhanced
Detected in all
heart:
78.3
MAX
ENSSSCG00000037267
ENSG00000125952
MYC associated factor X
Low tissue specificity
Detected in all
MAZ
ENSSSCG00000025321
ENSG00000103495
MYC associated zinc finger protein
Low tissue specificity
Detected in all
MB21D2
ENSSSCG00000011819
ENSG00000180611
Mab-21 domain containing 2
Tissue enhanced
Detected in all
lens:
36.7
MBD1
ENSSSCG00000004516
ENSG00000141644
Methyl-CpG binding domain protein 1
Low tissue specificity
Detected in all
MBD2
ENSSSCG00000004528
ENSG00000134046
Methyl-CpG binding domain protein 2
Low tissue specificity
Detected in all
MBD3
ENSSSCG00000013435
ENSG00000071655
Methyl-CpG binding domain protein 3
Tissue enhanced
Detected in all
lens:
77.6
MBD4
ENSSSCG00000033303
ENSG00000129071
Methyl-CpG binding domain 4, DNA glycosylase
Low tissue specificity
Detected in all
MBD5
ENSSSCG00000015667
ENSG00000204406
Methyl-CpG binding domain protein 5
Low tissue specificity
Detected in all
MBD6
ENSSSCG00000000431
ENSG00000166987
Methyl-CpG binding domain protein 6
Low tissue specificity
Detected in all
MBIP
ENSSSCG00000001946
ENSG00000151332
MAP3K12 binding inhibitory protein 1
Low tissue specificity
Detected in all
MBL1
ENSSSCG00000024252
Mannose-binding protein A
Tissue enriched
Detected in all
liver:
76.2
MBLAC2
ENSSSCG00000014152
ENSG00000176055
Metallo-beta-lactamase domain containing 2
Low tissue specificity
Detected in all
MBNL1
ENSSSCG00000011720
ENSG00000152601
Muscleblind like splicing regulator 1
Tissue enhanced
Detected in all
skeletal muscle:
106.1
MBNL2
ENSSSCG00000009505
ENSG00000139793
Muscleblind like splicing regulator 2
Low tissue specificity
Detected in all
MBNL3
ENSSSCG00000012676
ENSG00000076770
Muscleblind-like protein 3
Tissue enhanced
Detected in many
liver:
71.8
male glands:
45.2
testis:
55.3
MBOAT2
ENSSSCG00000023539
ENSG00000143797
Membrane bound O-acyltransferase domain containing 2
Tissue enhanced
Detected in all
choroid plexus:
38.6
MBOAT4
ENSSSCG00000015847
ENSG00000177669
Ghrelin O-acyltransferase
Low tissue specificity
Detected in all
MBOAT7
ENSSSCG00000003267
ENSG00000125505
Membrane bound O-acyltransferase domain containing 7
Low tissue specificity
Detected in all
MBTD1
ENSSSCG00000017592
ENSG00000011258
Mbt domain containing 1
Low tissue specificity
Detected in all
MBTPS1
ENSSSCG00000002682
ENSG00000140943
Membrane bound transcription factor peptidase, site 1
Low tissue specificity
Detected in all
MBTPS2
ENSSSCG00000012165
ENSG00000012174
Membrane bound transcription factor peptidase, site 2
Low tissue specificity
Detected in all
MC4R
ENSSSCG00000004904
ENSG00000166603
Melanocortin receptor 4
Group enriched
Detected in some
brain:
17.5
epididymis:
7.4
heart:
8.0
MC5R
ENSSSCG00000028411
ENSG00000176136
Melanocortin 5 receptor
Group enriched
Detected in some
adipose tissue:
13.2
aorta:
6.0
bone marrow:
9.6
epididymis:
4.7
skin:
6.1
MCAM
ENSSSCG00000015116
ENSG00000076706
Melanoma cell adhesion molecule
Low tissue specificity
Detected in many
MCAT
ENSSSCG00000000031
ENSG00000100294
Malonyl-CoA-acyl carrier protein transacylase
Low tissue specificity
Detected in all
MCCC1
ENSSSCG00000025942
ENSG00000078070
Methylcrotonoyl-CoA carboxylase 1
Low tissue specificity
Detected in all
MCCC2
ENSSSCG00000016971
ENSG00000131844
Methylcrotonoyl-CoA carboxylase 2
Low tissue specificity
Detected in all
MCCD1
ENSSSCG00000023018
ENSG00000204511
Mitochondrial coiled-coil domain 1
Group enriched
Detected in some
epididymis:
91.0
kidney:
72.1
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