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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
LRP3
ENSSSCG00000002863
ENSG00000130881
LDL receptor related protein 3
Low tissue specificity
Detected in all
LRP4
ENSSSCG00000013248
ENSG00000134569
LDL receptor related protein 4
Tissue enhanced
Detected in many
skin:
40.7
small intestine:
32.8
LRP5
ENSSSCG00000012885
ENSG00000162337
LDL receptor related protein 5
Low tissue specificity
Detected in all
LRP6
ENSSSCG00000000625
ENSG00000070018
LDL receptor related protein 6
Low tissue specificity
Detected in all
LRP8
ENSSSCG00000003848
ENSG00000157193
Low-density lipoprotein receptor-related protein 8 precursor
Tissue enhanced
Detected in many
brain:
30.5
ovary:
21.9
LRPAP1
ENSSSCG00000008701
ENSG00000163956
Alpha-2-macroglobulin receptor-associated protein precursor
Low tissue specificity
Detected in all
LRPPRC
ENSSSCG00000008452
ENSG00000138095
Leucine rich pentatricopeptide repeat containing
Low tissue specificity
Detected in all
LRR1
ENSSSCG00000005004
ENSG00000165501
Leucine rich repeat protein 1
Low tissue specificity
Detected in all
LRRC1
ENSSSCG00000001486
ENSG00000137269
Leucine rich repeat containing 1
Low tissue specificity
Detected in many
LRRC10B
ENSSSCG00000013088
ENSG00000204950
Leucine rich repeat containing 10B
Tissue enhanced
Detected in many
brain:
23.1
fallopian tube:
32.9
upper respiratory system:
32.2
LRRC14
ENSSSCG00000030451
ENSG00000160959
Leucine rich repeat containing 14
Low tissue specificity
Detected in all
LRRC14B
ENSSSCG00000033375
ENSG00000185028
Leucine rich repeat containing 14B
Low tissue specificity
Detected in all
LRRC17
ENSSSCG00000036452
ENSG00000128606
Leucine rich repeat containing 17
Tissue enhanced
Detected in many
heart:
29.1
male glands:
28.8
synovial tissue:
26.6
LRRC19
ENSSSCG00000005125
ENSG00000184434
Leucine rich repeat containing 19
Tissue enhanced
Detected in all
large intestine:
21.4
LRRC20
ENSSSCG00000010267
ENSG00000172731
Leucine rich repeat containing 20
Tissue enhanced
Detected in all
skeletal muscle:
38.2
LRRC23
ENSSSCG00000000679
ENSG00000010626
Leucine rich repeat containing 23
Tissue enhanced
Detected in many
fallopian tube:
24.2
lung:
15.1
testis:
26.6
upper respiratory system:
24.0
LRRC24
ENSSSCG00000005896
ENSG00000254402
Leucine rich repeat containing 24
Low tissue specificity
Detected in all
LRRC25
ENSSSCG00000036963
ENSG00000175489
Leucine rich repeat containing 25
Low tissue specificity
Detected in all
LRRC26
ENSSSCG00000032509
ENSG00000184709
Leucine rich repeat containing 26
Tissue enriched
Detected in many
male glands:
160.2
LRRC28
ENSSSCG00000004814
ENSG00000168904
Leucine rich repeat containing 28
Low tissue specificity
Detected in all
LRRC3
ENSSSCG00000027975
ENSG00000160233
Leucine rich repeat containing 3
Tissue enhanced
Detected in many
liver:
47.7
LRRC31
ENSSSCG00000032225
ENSG00000114248
Leucine rich repeat containing 31
Low tissue specificity
Detected in all
LRRC32
ENSSSCG00000014869
ENSG00000137507
Leucine rich repeat containing 32
Tissue enhanced
Detected in many
mesothelial tissue:
43.0
LRRC34
ENSSSCG00000024714
ENSG00000171757
Leucine rich repeat containing 34
Tissue enhanced
Detected in many
choroid plexus:
16.3
fallopian tube:
19.0
testis:
43.4
LRRC38
ENSSSCG00000003449
ENSG00000162494
Leucine rich repeat containing 38
Tissue enhanced
Detected in some
brain:
10.0
cartilage:
8.6
epididymis:
5.9
heart:
7.6
LRRC4
ENSSSCG00000016589
ENSG00000128594
Leucine rich repeat containing 4
Tissue enhanced
Detected in all
brain:
32.3
LRRC41
ENSSSCG00000003904
ENSG00000132128
Leucine rich repeat containing 41
Low tissue specificity
Detected in all
LRRC42
ENSSSCG00000029698
ENSG00000116212
Leucine rich repeat containing 42
Tissue enhanced
Detected in all
lens:
68.3
LRRC43
ENSSSCG00000009796
ENSG00000158113
Leucine rich repeat containing 43
Low tissue specificity
Detected in all
LRRC45
ENSSSCG00000040503
ENSG00000169683
Leucine rich repeat containing 45
Low tissue specificity
Detected in all
LRRC46
ENSSSCG00000017520
ENSG00000141294
Leucine rich repeat containing 46
Tissue enhanced
Detected in some
fallopian tube:
26.9
testis:
53.1
upper respiratory system:
32.8
LRRC47
ENSSSCG00000039516
ENSG00000130764
Leucine rich repeat containing 47
Low tissue specificity
Detected in all
LRRC51
ENSSSCG00000014803
ENSG00000284922
Leucine-rich repeat-containing protein 51
Tissue enriched
Detected in many
testis:
72.5
LRRC56
ENSSSCG00000027045
ENSG00000161328
Leucine rich repeat containing 56
Tissue enhanced
Detected in many
fallopian tube:
17.4
lens:
25.9
testis:
44.3
upper respiratory system:
22.1
LRRC57
ENSSSCG00000004726
ENSG00000180979
Leucine-rich repeat-containing protein 57
Low tissue specificity
Detected in all
LRRC58
ENSSSCG00000034616
ENSG00000163428
Leucine rich repeat containing 58
Low tissue specificity
Detected in all
LRRC59
ENSSSCG00000028019
ENSG00000108829
Leucine-rich repeat-containing protein 59
Low tissue specificity
Detected in all
LRRC6
ENSSSCG00000005952
ENSG00000129295
Protein tilB homolog
Tissue enhanced
Detected in all
fallopian tube:
22.4
testis:
35.1
LRRC61
ENSSSCG00000040690
ENSG00000127399
Leucine rich repeat containing 61
Tissue enhanced
Detected in all
testis:
28.3
LRRC66
ENSSSCG00000008832
ENSG00000188993
Leucine rich repeat containing 66
Low tissue specificity
Detected in all
LRRC70
ENSSSCG00000037608
ENSG00000186105
Leucine rich repeat containing 70
Low tissue specificity
Detected in many
LRRC71
ENSSSCG00000006462
ENSG00000160838
Leucine rich repeat containing 71
Tissue enhanced
Detected in many
epididymis:
27.3
fallopian tube:
35.6
lung:
17.2
upper respiratory system:
17.3
LRRC72
ENSSSCG00000015361
ENSG00000205858
Leucine rich repeat containing 72
Tissue enriched
Detected in many
testis:
43.7
LRRC74B
ENSSSCG00000010100
ENSG00000187905
Leucine rich repeat containing 74B
Low tissue specificity
Detected in all
LRRC75A
ENSSSCG00000036776
ENSG00000181350
Leucine rich repeat containing 75A
Low tissue specificity
Detected in all
LRRC75B
ENSSSCG00000010057
ENSG00000178026
Leucine rich repeat containing 75B
Tissue enhanced
Detected in many
lens:
17.5
male glands:
13.8
LRRC8A
ENSSSCG00000005664
ENSG00000136802
Leucine rich repeat containing 8 VRAC subunit A
Low tissue specificity
Detected in all
LRRC8B
ENSSSCG00000037101
ENSG00000197147
Leucine rich repeat containing 8 VRAC subunit B
Tissue enhanced
Detected in many
brain:
39.9
testis:
57.6
LRRC8D
ENSSSCG00000038417
ENSG00000171492
Leucine rich repeat containing 8 VRAC subunit D
Low tissue specificity
Detected in all
LRRC8E
ENSSSCG00000013586
ENSG00000171017
Leucine rich repeat containing 8 VRAC subunit E
Tissue enhanced
Detected in many
male glands:
21.2
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