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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
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Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
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Esophagus
Fallopian tube
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Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15311 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KCNMB3
ENSSSCG00000029240
ENSG00000171121
Potassium calcium-activated channel subfamily M regulatory beta subunit 3
Tissue enhanced
Detected in many
lymphoid tissue:
16.0
KCNN2
ENSSSCG00000014213
ENSG00000080709
Potassium calcium-activated channel subfamily N member 2
Tissue enhanced
Detected in many
adrenal gland:
33.7
liver:
43.1
male glands:
49.4
KCNN3
ENSSSCG00000006542
ENSG00000143603
Small conductance calcium-activated potassium channel protein 3
Tissue enhanced
Detected in many
penis:
52.7
smooth muscle:
52.1
KCNQ4
ENSSSCG00000003975
ENSG00000117013
Potassium voltage-gated channel subfamily Q member 4
Tissue enhanced
Detected in many
skeletal muscle:
24.0
KCNQ5
ENSSSCG00000004281
ENSG00000185760
Potassium voltage-gated channel subfamily Q member 5
Group enriched
Detected in many
brain:
24.8
cartilage:
65.1
KCNS1
ENSSSCG00000007385
ENSG00000124134
Potassium voltage-gated channel modifier subfamily S member 1
Tissue enhanced
Detected in many
epididymis:
13.1
KCNT2
ENSSSCG00000010892
ENSG00000162687
Potassium sodium-activated channel subfamily T member 2
Tissue enhanced
Detected in many
brain:
24.0
heart:
12.7
pituitary gland:
17.4
KCNV1
ENSSSCG00000006021
ENSG00000164794
Potassium voltage-gated channel modifier subfamily V member 1
Tissue enriched
Detected in some
brain:
25.4
KCP
ENSSSCG00000016574
ENSG00000135253
Kielin/chordin-like protein
Tissue enhanced
Detected in many
epididymis:
63.0
kidney:
41.0
lymphoid tissue:
27.9
KCTD10
ENSSSCG00000009934
ENSG00000110906
Potassium channel tetramerization domain containing 10
Low tissue specificity
Detected in all
KCTD12
ENSSSCG00000009468
ENSG00000178695
Potassium channel tetramerization domain containing 12
Tissue enhanced
Detected in many
adrenal gland:
93.4
KCTD13
ENSSSCG00000040888
ENSG00000174943
Potassium channel tetramerization domain containing 13
Tissue enhanced
Detected in all
brain:
23.3
KCTD15
ENSSSCG00000033695
ENSG00000153885
Potassium channel tetramerization domain containing 15
Tissue enhanced
Detected in all
smooth muscle:
61.3
KCTD17
ENSSSCG00000000135
ENSG00000100379
Potassium channel tetramerization domain containing 17
Tissue enhanced
Detected in many
brain:
47.4
stomach:
34.6
KCTD2
ENSSSCG00000031958
ENSG00000180901
Potassium channel tetramerization domain containing 2
Low tissue specificity
Detected in all
KCTD20
ENSSSCG00000001562
ENSG00000112078
Potassium channel tetramerization domain containing 20
Low tissue specificity
Detected in all
KCTD21
ENSSSCG00000033506
ENSG00000188997
Potassium channel tetramerization domain containing 21
Tissue enhanced
Detected in many
brain:
21.5
lens:
17.9
KCTD4
ENSSSCG00000022868
ENSG00000180332
Potassium channel tetramerization domain containing 4
Tissue enhanced
Detected in all
brain:
22.8
vagus nerve:
19.1
KCTD5
ENSSSCG00000008058
ENSG00000167977
Potassium channel tetramerization domain containing 5
Low tissue specificity
Detected in all
KCTD6
ENSSSCG00000022131
ENSG00000168301
Potassium channel tetramerization domain containing 6
Low tissue specificity
Detected in all
KCTD7
ENSSSCG00000040985
ENSG00000243335
Potassium channel tetramerization domain containing 7
Tissue enhanced
Detected in all
brain:
37.1
epididymis:
44.2
male glands:
49.0
KCTD9
ENSSSCG00000009652
ENSG00000104756
Potassium channel tetramerization domain containing 9
Low tissue specificity
Detected in all
KDELC1
ENSSSCG00000009532
ENSG00000134901
KDEL motif containing 1
Low tissue specificity
Detected in all
KDELC2
ENSSSCG00000015009
ENSG00000178202
KDEL motif containing 2
Low tissue specificity
Detected in all
KDELR1
ENSSSCG00000003132
ENSG00000105438
KDEL endoplasmic reticulum protein retention receptor 1
Low tissue specificity
Detected in all
KDELR2
ENSSSCG00000031432
ENSG00000136240
KDEL endoplasmic reticulum protein retention receptor 2
Tissue enhanced
Detected in all
male glands:
91.3
KDELR3
ENSSSCG00000000105
ENSG00000100196
ER lumen protein-retaining receptor 3
Tissue enhanced
Detected in many
male glands:
100.4
KDF1
ENSSSCG00000003567
ENSG00000175707
Keratinocyte differentiation factor 1
Low tissue specificity
Detected in many
KDM1A
ENSSSCG00000003531
ENSG00000004487
Lysine-specific histone demethylase 1A
Low tissue specificity
Detected in all
KDM1B
ENSSSCG00000001074
ENSG00000165097
Lysine demethylase 1B
Low tissue specificity
Detected in all
KDM2A
ENSSSCG00000029637
ENSG00000173120
Lysine-specific demethylase 2A
Low tissue specificity
Detected in all
KDM2B
ENSSSCG00000029803
ENSG00000089094
Lysine demethylase 2B
Low tissue specificity
Detected in all
KDM3A
ENSSSCG00000008221
ENSG00000115548
Lysine demethylase 3A
Low tissue specificity
Detected in all
KDM3B
ENSSSCG00000014331
ENSG00000120733
Lysine demethylase 3B
Low tissue specificity
Detected in all
KDM4B
ENSSSCG00000024570
ENSG00000127663
Lysine demethylase 4B
Low tissue specificity
Detected in all
KDM4C
ENSSSCG00000005198
ENSG00000107077
Lysine demethylase 4C
Tissue enhanced
Detected in all
lymphoid tissue:
47.4
KDM5A
ENSSSCG00000029464
ENSG00000073614
Lysine demethylase 5A
Low tissue specificity
Detected in all
KDM5B
ENSSSCG00000010928
ENSG00000117139
Lysine demethylase 5B
Low tissue specificity
Detected in all
KDM5C
ENSSSCG00000012322
ENSG00000126012
Lysine-specific demethylase 5C
Low tissue specificity
Detected in all
KDM6A
ENSSSCG00000012262
ENSG00000147050
Lysine demethylase 6A
Low tissue specificity
Detected in all
KDM6B
ENSSSCG00000017962
ENSG00000132510
Lysine demethylase 6B
Low tissue specificity
Detected in all
KDM7A
ENSSSCG00000016501
ENSG00000006459
Lysine demethylase 7A
Low tissue specificity
Detected in all
KDM8
ENSSSCG00000007818
ENSG00000155666
Lysine demethylase 8
Low tissue specificity
Detected in all
KDR
ENSSSCG00000008844
ENSG00000128052
Kinase insert domain receptor
Low tissue specificity
Detected in many
KDSR
ENSSSCG00000025744
ENSG00000119537
3-ketodihydrosphingosine reductase
Low tissue specificity
Detected in all
KEAP1
ENSSSCG00000023667
ENSG00000079999
Kelch-like ECH-associated protein 1
Low tissue specificity
Detected in all
KEL
ENSSSCG00000016472
ENSG00000197993
Kell blood group, metallo-endopeptidase
Tissue enhanced
Detected in many
liver:
18.0
upper respiratory system:
20.6
KHDC4
ENSSSCG00000006504
ENSG00000132680
KH domain containing 4, pre-mRNA splicing factor
Tissue enhanced
Detected in all
lymphoid tissue:
75.4
KHDRBS1
ENSSSCG00000023122
ENSG00000121774
KH domain-containing, RNA-binding, signal transduction-associated protein 1
Low tissue specificity
Detected in all
KHDRBS3
ENSSSCG00000005941
ENSG00000131773
KH RNA binding domain containing, signal transduction associated 3
Group enriched
Detected in many
brain:
38.0
testis:
45.1
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