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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C22orf39
ENSSSCG00000040740
ENSG00000242259
Chromosome 22 open reading frame 39
Low tissue specificity
Detected in all
C2CD2
ENSSSCG00000025821
ENSG00000157617
C2 calcium dependent domain containing 2
Tissue enhanced
Detected in all
retina:
48.7
C2CD2L
ENSSSCG00000015111
ENSG00000172375
C2CD2 like
Low tissue specificity
Detected in all
C2CD3
ENSSSCG00000014835
ENSG00000168014
C2 calcium dependent domain containing 3
Low tissue specificity
Detected in all
C2CD5
ENSSSCG00000000570
ENSG00000111731
C2 calcium dependent domain containing 5
Low tissue specificity
Detected in all
C2orf15
ENSSSCG00000038761
ENSG00000273045
Chromosome 2 open reading frame 15
Low tissue specificity
Detected in all
C2orf40
ENSSSCG00000037106
ENSG00000119147
Augurin precursor
Group enriched
Detected in many
cartilage:
221.4
choroid plexus:
64.2
C2orf42
ENSSSCG00000008332
ENSG00000115998
Uncharacterized protein C2orf42 homolog
Tissue enhanced
Detected in all
testis:
39.8
C2orf49
ENSSSCG00000035390
ENSG00000135974
Chromosome 2 open reading frame 49
Low tissue specificity
Detected in all
C2orf68
ENSSSCG00000028287
ENSG00000168887
Chromosome 2 open reading frame 68
Low tissue specificity
Detected in all
C2orf69
ENSSSCG00000016086
ENSG00000178074
Chromosome 2 open reading frame 69
Low tissue specificity
Detected in all
C2orf72
ENSSSCG00000016270
ENSG00000204128
Chromosome 2 open reading frame 72
Tissue enhanced
Detected in many
liver:
40.7
C2orf73
ENSSSCG00000008410
ENSG00000177994
Chromosome 2 open reading frame 73
Tissue enriched
Detected in all
testis:
57.8
C2orf76
ENSSSCG00000015718
ENSG00000186132
Chromosome 2 open reading frame 76
Low tissue specificity
Detected in all
C2orf80
ENSSSCG00000032040
ENSG00000188674
Chromosome 2 open reading frame 80
Low tissue specificity
Detected in all
C2orf88
ENSSSCG00000033941
ENSG00000187699
Chromosome 2 open reading frame 88
Tissue enhanced
Detected in all
heart:
57.9
C3
ENSSSCG00000013551
ENSG00000125730
Complement C3 precursor
Tissue enhanced
Detected in many
liver:
357.3
small intestine:
96.6
stomach:
99.9
C3orf14
ENSSSCG00000011486
ENSG00000114405
Chromosome 3 open reading frame 14
Tissue enhanced
Detected in many
brain:
13.4
pineal gland:
18.9
pituitary gland:
10.1
retina:
9.6
C3orf18
ENSSSCG00000037433
ENSG00000088543
Chromosome 3 open reading frame 18
Tissue enhanced
Detected in many
retina:
14.2
C3orf20
ENSSSCG00000040594
ENSG00000131379
Chromosome 3 open reading frame 20
Tissue enriched
Detected in all
testis:
62.1
C3orf33
ENSSSCG00000021495
ENSG00000174928
Chromosome 3 open reading frame 33
Low tissue specificity
Detected in all
C3orf38
ENSSSCG00000034645
ENSG00000179021
Chromosome 3 open reading frame 38
Low tissue specificity
Detected in all
C3orf58
ENSSSCG00000036206
ENSG00000181744
Chromosome 3 open reading frame 58
Low tissue specificity
Detected in all
C3orf67
ENSSSCG00000011482
ENSG00000163689
Chromosome 3 open reading frame 67
Low tissue specificity
Detected in all
C3orf70
ENSSSCG00000038724
ENSG00000187068
Chromosome 3 open reading frame 70
Tissue enhanced
Detected in many
cervix:
28.9
C3orf80
ENSSSCG00000035935
ENSG00000180044
Chromosome 3 open reading frame 80
Tissue enhanced
Detected in many
adipose tissue:
12.4
brain:
8.5
stomach:
7.8
C4A
ENSSSCG00000001427
ENSG00000224389,ENSG00000244731
Complement C4-A precursor
Tissue enhanced
Detected in many
adipose tissue:
79.1
liver:
104.7
C4BPA
ENSSSCG00000015662
Apolipoprotein R precursor
Tissue enhanced
Detected in many
small intestine:
84.1
synovial tissue:
193.7
C4BPB
ENSSSCG00000015661
ENSG00000123843
Complement component 4 binding protein beta
Group enriched
Detected in all
liver:
53.7
small intestine:
17.1
C4orf17
ENSSSCG00000009181
ENSG00000138813
Chromosome 4 open reading frame 17
Group enriched
Detected in many
fallopian tube:
22.7
liver:
20.2
testis:
48.0
C4orf19
ENSSSCG00000008771
ENSG00000154274
Chromosome 4 open reading frame 19
Tissue enhanced
Detected in all
liver:
34.1
stomach:
39.0
C4orf46
ENSSSCG00000028492
ENSG00000205208
Chromosome 4 open reading frame 46
Tissue enhanced
Detected in all
testis:
20.0
C4orf47
ENSSSCG00000015794
ENSG00000205129
UPF0602 protein C4orf47 homolog
Low tissue specificity
Detected in all
C4orf48
ENSSSCG00000008686
ENSG00000243449
Chromosome 4 open reading frame 48
Tissue enhanced
Detected in many
brain:
41.5
lens:
37.4
testis:
57.6
C5AR1
ENSSSCG00000029371
ENSG00000197405
C5a anaphylatoxin chemotactic receptor 1
Tissue enhanced
Detected in all
synovial tissue:
61.0
C5AR2
ENSSSCG00000003113
ENSG00000134830
Complement component 5a receptor 2
Tissue enhanced
Detected in many
cartilage:
39.6
penis:
16.1
C5orf15
ENSSSCG00000032323
ENSG00000113583
Chromosome 5 open reading frame 15
Low tissue specificity
Detected in all
C5orf22
ENSSSCG00000016808
ENSG00000082213
Chromosome 5 open reading frame 22
Low tissue specificity
Detected in all
C5orf24
ENSSSCG00000034954
ENSG00000181904
Chromosome 5 open reading frame 24
Low tissue specificity
Detected in all
C5orf30
ENSSSCG00000038779
ENSG00000181751
Chromosome 5 open reading frame 30
Tissue enhanced
Detected in all
adrenal gland:
25.4
brain:
28.3
C5orf42
ENSSSCG00000016843
ENSG00000197603
Chromosome 5 open reading frame 42
Low tissue specificity
Detected in all
C5orf49
ENSSSCG00000017098
ENSG00000215217
Chromosome 5 open reading frame 49
Tissue enhanced
Detected in many
brain:
21.5
testis:
26.3
upper respiratory system:
33.7
C5orf51
ENSSSCG00000040855
ENSG00000205765
Chromosome 5 open reading frame 51
Low tissue specificity
Detected in all
C6orf106
ENSSSCG00000001527
ENSG00000196821
Uncharacterized protein C6orf106 homolog
Low tissue specificity
Detected in all
C6orf120
ENSSSCG00000038931
ENSG00000185127
Chromosome 6 open reading frame 120
Tissue enhanced
Detected in all
male glands:
49.6
C6orf136
ENSSSCG00000025943
ENSG00000204564
Uncharacterized protein C6orf136 homolog
Low tissue specificity
Detected in all
C6orf163
ENSSSCG00000004301
ENSG00000203872
Chromosome 6 open reading frame 163
Tissue enhanced
Detected in many
pituitary gland:
18.2
testis:
39.6
C6orf203
ENSSSCG00000037985
ENSG00000130349
Chromosome 6 open reading frame 203
Low tissue specificity
Detected in all
C6orf222
ENSSSCG00000001560
ENSG00000189325
Chromosome 6 open reading frame 222
Low tissue specificity
Detected in all
C6orf229
ENSSSCG00000001096
ENSG00000260286
Chromosome 6 open reading frame 229
Tissue enriched
Detected in some
testis:
32.3
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