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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000016990
ENSG00000113732
V-type proton ATPase subunit e 1
Low tissue specificity
Detected in all
na
ENSSSCG00000017032
ENSG00000164611,ENSG00000250254
Tissue enhanced
Detected in many
testis:
49.4
na
ENSSSCG00000017038
ENSG00000170234
Tissue enhanced
Detected in all
thyroid gland:
71.8
na
ENSSSCG00000017061
ENSG00000113249
Hepatitis A virus cellular receptor 1 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000017062
ENSG00000145850
Tissue enhanced
Detected in many
lymphoid tissue:
53.3
synovial tissue:
28.0
upper respiratory system:
31.7
na
ENSSSCG00000017063
ENSG00000170624
Delta-sarcoglycan
Low tissue specificity
Detected in many
na
ENSSSCG00000017065
ENSG00000082515
Tissue enhanced
Detected in all
ovary:
79.0
na
ENSSSCG00000017108
Low tissue specificity
Detected in all
na
ENSSSCG00000017128
ENSG00000169660
Low tissue specificity
Detected in all
na
ENSSSCG00000017129
ENSG00000102128,ENSG00000141542,ENSG00000172476
Low tissue specificity
Detected in many
na
ENSSSCG00000017202
Histone H3.3
Low tissue specificity
Detected in all
na
ENSSSCG00000017235
Low tissue specificity
Detected in all
na
ENSSSCG00000017237
ENSG00000178789
Tissue enhanced
Detected in many
dura mater:
8.3
synovial tissue:
10.9
na
ENSSSCG00000017239
ENSG00000172809
Tissue enhanced
Detected in all
male glands:
300.6
na
ENSSSCG00000017331
ENSG00000184361
Tissue enriched
Detected in all
testis:
46.8
na
ENSSSCG00000017345
ENSG00000167131,ENSG00000214447
Tissue enhanced
Detected in all
testis:
14.6
na
ENSSSCG00000017352
ENSG00000180329
Low tissue specificity
Detected in all
na
ENSSSCG00000017394
Low tissue specificity
Detected in all
na
ENSSSCG00000017419
ENSG00000168259
Tissue enhanced
Detected in all
lens:
90.3
na
ENSSSCG00000017446
Low tissue specificity
Detected in many
na
ENSSSCG00000017463
Tissue enhanced
Detected in many
epididymis:
27.8
na
ENSSSCG00000017507
Low tissue specificity
Detected in all
na
ENSSSCG00000017529
Low tissue specificity
Detected in all
na
ENSSSCG00000017544
ENSG00000159199
ATP synthase F(0) complex subunit C1, mitochondrial
Tissue enhanced
Detected in all
heart:
72.2
skeletal muscle:
72.6
na
ENSSSCG00000017555
Low tissue specificity
Detected in all
na
ENSSSCG00000017574
Tissue enhanced
Detected in all
lymphoid tissue:
19.0
na
ENSSSCG00000017577
Group enriched
Detected in all
cartilage:
12.8
salivary gland:
15.9
testis:
21.7
na
ENSSSCG00000017590
Low tissue specificity
Detected in many
na
ENSSSCG00000017608
ENSG00000141179
Low tissue specificity
Detected in all
na
ENSSSCG00000017671
ENSG00000189050
Low tissue specificity
Detected in all
na
ENSSSCG00000017699
Tissue enhanced
Detected in many
heart:
10.5
mesothelial tissue:
9.5
na
ENSSSCG00000017749
ENSG00000126860,ENSG00000265118
Tissue enriched
Detected in many
brain:
93.5
na
ENSSSCG00000017754
ENSG00000168961,ENSG00000170298,ENSG00000171916
Galectin-9 isoform 5
Tissue enhanced
Detected in many
small intestine:
65.6
stomach:
86.5
na
ENSSSCG00000017768
Tissue enhanced
Detected in many
ovary:
8.6
na
ENSSSCG00000017783
Tissue enhanced
Detected in all
stomach:
77.7
na
ENSSSCG00000017796
ENSG00000108578
Low tissue specificity
Detected in all
na
ENSSSCG00000017808
Tissue enriched
Detected in many
testis:
122.2
na
ENSSSCG00000017849
Tissue enhanced
Detected in many
fallopian tube:
11.2
skin:
12.1
small intestine:
9.8
na
ENSSSCG00000017856
ENSG00000180042
Tissue enhanced
Detected in many
fallopian tube:
15.3
skin:
12.0
testis:
9.9
upper respiratory system:
8.1
na
ENSSSCG00000017864
ENSG00000197417
Tissue enhanced
Detected in all
liver:
22.8
na
ENSSSCG00000017868
ENSG00000083454
Tissue enhanced
Detected in many
heart:
31.3
skeletal muscle:
45.2
na
ENSSSCG00000017906
ENSG00000108523
Low tissue specificity
Detected in all
na
ENSSSCG00000017920
ENSG00000161921
C-X-C motif chemokine 16 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
82.8
na
ENSSSCG00000017928
ENSG00000161939,ENSG00000258315
Low tissue specificity
Detected in all
na
ENSSSCG00000017940
ENSG00000132522
Tissue enhanced
Detected in all
testis:
90.6
na
ENSSSCG00000017945
ENSG00000182896
Tissue enhanced
Detected in many
lymphoid tissue:
10.4
na
ENSSSCG00000017949
ENSG00000141499
Low tissue specificity
Detected in all
na
ENSSSCG00000017987
ENSG00000133026
Tissue enhanced
Detected in all
aorta:
62.8
na
ENSSSCG00000018018
Low tissue specificity
Detected in all
na
ENSSSCG00000018026
ENSG00000171931
Tissue enhanced
Detected in many
testis:
60.6
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