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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ARHGEF12
ENSSSCG00000015129
ENSG00000196914
Rho guanine nucleotide exchange factor 12
Low tissue specificity
Detected in all
ARHGEF15
ENSSSCG00000028048
ENSG00000198844
Rho guanine nucleotide exchange factor 15
Low tissue specificity
Detected in many
ARHGEF17
ENSSSCG00000014822
ENSG00000110237
Rho guanine nucleotide exchange factor 17
Low tissue specificity
Detected in all
ARHGEF19
ENSSSCG00000003472
ENSG00000142632
Rho guanine nucleotide exchange factor 19
Tissue enhanced
Detected in all
cartilage:
46.8
ARHGEF2
ENSSSCG00000006502
ENSG00000116584
Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
ARHGEF25
ENSSSCG00000000435
ENSG00000240771
Rho guanine nucleotide exchange factor 25
Tissue enhanced
Detected in all
cervix:
47.4
ARHGEF26
ENSSSCG00000024205
ENSG00000114790
Rho guanine nucleotide exchange factor 26
Tissue enhanced
Detected in all
smooth muscle:
49.9
ARHGEF28
ENSSSCG00000028317
ENSG00000214944
Rho guanine nucleotide exchange factor 28
Tissue enhanced
Detected in many
salivary gland:
46.9
ARHGEF3
ENSSSCG00000030359
ENSG00000163947
Rho guanine nucleotide exchange factor 3
Low tissue specificity
Detected in all
ARHGEF33
ENSSSCG00000040621
ENSG00000214694
Rho guanine nucleotide exchange factor 33
Tissue enriched
Detected in many
brain:
33.5
ARHGEF37
ENSSSCG00000014436
ENSG00000183111
Rho guanine nucleotide exchange factor 37
Tissue enhanced
Detected in many
lens:
48.8
ARHGEF39
ENSSSCG00000005314
ENSG00000137135
Rho guanine nucleotide exchange factor 39
Tissue enhanced
Detected in many
lymphoid tissue:
33.4
testis:
37.3
ARHGEF40
ENSSSCG00000023857
ENSG00000165801
Rho guanine nucleotide exchange factor 40
Low tissue specificity
Detected in all
ARHGEF6
ENSSSCG00000030460
ENSG00000129675
Rac/Cdc42 guanine nucleotide exchange factor 6
Low tissue specificity
Detected in all
ARHGEF7
ENSSSCG00000009551
ENSG00000102606
Rho guanine nucleotide exchange factor 7
Low tissue specificity
Detected in all
ARHGEF9
ENSSSCG00000012362
ENSG00000131089
Cdc42 guanine nucleotide exchange factor 9
Tissue enhanced
Detected in many
brain:
38.2
pineal gland:
35.1
ARID1A
ENSSSCG00000003559
ENSG00000117713
AT-rich interaction domain 1A
Low tissue specificity
Detected in all
ARID1B
ENSSSCG00000004064
ENSG00000049618
AT-rich interaction domain 1B
Low tissue specificity
Detected in all
ARID2
ENSSSCG00000030685
ENSG00000189079
AT-rich interaction domain 2
Low tissue specificity
Detected in all
ARID3A
ENSSSCG00000037642
ENSG00000116017
AT-rich interaction domain 3A
Tissue enhanced
Detected in all
testis:
40.3
ARID3B
ENSSSCG00000001905
ENSG00000179361
AT-rich interaction domain 3B
Low tissue specificity
Detected in all
ARID4A
ENSSSCG00000005073
ENSG00000032219
AT-rich interactive domain-containing protein 4A
Low tissue specificity
Detected in all
ARID4B
ENSSSCG00000010156
ENSG00000054267
AT-rich interaction domain 4B
Low tissue specificity
Detected in all
ARID5A
ENSSSCG00000008123
ENSG00000196843
AT-rich interaction domain 5A
Low tissue specificity
Detected in many
ARID5B
ENSSSCG00000010219
ENSG00000150347
AT-rich interaction domain 5B
Low tissue specificity
Detected in all
ARIH1
ENSSSCG00000023188
ENSG00000166233
Ariadne RBR E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
ARIH2
ENSSSCG00000011367
ENSG00000177479
Ariadne RBR E3 ubiquitin protein ligase 2
Low tissue specificity
Detected in all
ARL1
ENSSSCG00000000870
ENSG00000120805
ADP ribosylation factor like GTPase 1
Tissue enhanced
Detected in all
male glands:
77.0
ARL10
ENSSSCG00000029985
ENSG00000175414
ADP ribosylation factor like GTPase 10
Low tissue specificity
Detected in all
ARL11
ENSSSCG00000036810
ENSG00000152213
ADP ribosylation factor like GTPase 11
Low tissue specificity
Detected in all
ARL14EP
ENSSSCG00000039889
ENSG00000152219
ADP ribosylation factor like GTPase 14 effector protein
Low tissue specificity
Detected in all
ARL15
ENSSSCG00000016894
ENSG00000185305
ADP ribosylation factor like GTPase 15
Low tissue specificity
Detected in all
ARL16
ENSSSCG00000038161
ENSG00000214087
ADP ribosylation factor like GTPase 16
Low tissue specificity
Detected in all
ARL2-SNX15
ENSSSCG00000034387
ARL2-SNX15 readthrough (NMD candidate)
Low tissue specificity
Detected in all
ARL2BP
ENSSSCG00000002819
ENSG00000102931
ADP ribosylation factor like GTPase 2 binding protein
Low tissue specificity
Detected in all
ARL3
ENSSSCG00000031782
ENSG00000138175
ADP-ribosylation factor-like protein 3
Tissue enhanced
Detected in all
lens:
44.5
pineal gland:
36.6
ARL4C
ENSSSCG00000034293
ENSG00000188042
ADP-ribosylation factor-like protein 4C
Tissue enriched
Detected in many
ovary:
79.5
ARL4D
ENSSSCG00000017380
ENSG00000175906
ADP ribosylation factor like GTPase 4D
Tissue enhanced
Detected in many
dura mater:
20.3
kidney:
25.1
ARL5A
ENSSSCG00000031541
ENSG00000162980
ADP ribosylation factor like GTPase 5A
Low tissue specificity
Detected in all
ARL5B
ENSSSCG00000031456
ENSG00000165997
ADP ribosylation factor like GTPase 5B
Low tissue specificity
Detected in all
ARL6
ENSSSCG00000027278
ENSG00000113966
ADP ribosylation factor like GTPase 6
Low tissue specificity
Detected in all
ARL6IP5
ENSSSCG00000033154
ENSG00000144746
PRA1 family protein 3
Low tissue specificity
Detected in all
ARL6IP6
ENSSSCG00000015868
ENSG00000177917
ADP ribosylation factor like GTPase 6 interacting protein 6
Low tissue specificity
Detected in all
ARL8A
ENSSSCG00000036967
ENSG00000143862
ADP ribosylation factor like GTPase 8A
Tissue enhanced
Detected in all
brain:
58.1
ARL8B
ENSSSCG00000011535
ENSG00000134108
ADP-ribosylation factor-like protein 8B
Low tissue specificity
Detected in all
ARL9
ENSSSCG00000008899
ENSG00000196503
ADP ribosylation factor like GTPase 9
Tissue enhanced
Detected in all
testis:
53.7
ARMC1
ENSSSCG00000006220
ENSG00000104442
Armadillo repeat-containing protein 1
Low tissue specificity
Detected in all
ARMC10
ENSSSCG00000028444
ENSG00000170632
Armadillo repeat-containing protein 10
Tissue enhanced
Detected in all
male glands:
71.9
ARMC3
ENSSSCG00000011078
ENSG00000165309
Armadillo repeat containing 3
Tissue enhanced
Detected in all
testis:
27.4
ARMC5
ENSSSCG00000025245
ENSG00000140691
Armadillo repeat containing 5
Low tissue specificity
Detected in all
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