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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15378 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000004253
ENSG00000282218
Low tissue specificity
Detected in all
na
ENSSSCG00000004342
ENSG00000123545
Tissue enriched
Detected in many
epididymis:
62.7
na
ENSSSCG00000004353
Cyclin-C
Low tissue specificity
Detected in all
na
ENSSSCG00000004355
Tissue enhanced
Detected in all
testis:
17.6
na
ENSSSCG00000004388
ENSG00000118690
Tissue enhanced
Detected in all
choroid plexus:
28.9
fallopian tube:
23.2
testis:
24.9
na
ENSSSCG00000004389
Tissue enhanced
Detected in many
skeletal muscle:
45.3
na
ENSSSCG00000004396
Low tissue specificity
Detected in all
na
ENSSSCG00000004441
ENSG00000111817
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000004445
ENSG00000164451
Tissue enriched
Detected in all
skin:
41.7
na
ENSSSCG00000004463
ENSG00000144713
Tissue enhanced
Detected in many
stomach:
21.1
na
ENSSSCG00000004518
ENSG00000154839
Low tissue specificity
Detected in all
na
ENSSSCG00000004547
ENSG00000241839
Low tissue specificity
Detected in many
na
ENSSSCG00000004556
ENSG00000028528
Low tissue specificity
Detected in all
na
ENSSSCG00000004572
Tissue enhanced
Detected in many
stomach:
27.1
upper respiratory system:
31.1
na
ENSSSCG00000004575
Tissue enhanced
Detected in many
epididymis:
51.5
lens:
28.1
na
ENSSSCG00000004583
ENSG00000140307
Low tissue specificity
Detected in all
na
ENSSSCG00000004594
Low tissue specificity
Detected in all
na
ENSSSCG00000004624
ENSG00000069956
Low tissue specificity
Detected in all
na
ENSSSCG00000004656
ENSG00000255302
Low tissue specificity
Detected in all
na
ENSSSCG00000004666
ENSG00000137767,ENSG00000260170
Sulfide:quinone oxidoreductase, mitochondrial
Tissue enhanced
Detected in all
large intestine:
94.8
na
ENSSSCG00000004674
Tissue enriched
Detected in many
brain:
57.1
na
ENSSSCG00000004701
ENSG00000166762
Cation channel sperm-associated protein 2
Tissue enhanced
Detected in all
epididymis:
28.3
na
ENSSSCG00000004709
Low tissue specificity
Detected in all
na
ENSSSCG00000004766
ENSG00000051180,ENSG00000285396
DNA repair protein RAD51 homolog 1
Low tissue specificity
Detected in all
na
ENSSSCG00000004786
Low tissue specificity
Detected in all
na
ENSSSCG00000004806
ENSG00000198826
Tissue enhanced
Detected in many
lymphoid tissue:
18.0
na
ENSSSCG00000004830
Tissue enhanced
Detected in many
adrenal gland:
33.3
na
ENSSSCG00000004839
ENSG00000166664
Tissue enhanced
Detected in many
brain:
13.3
cornea:
9.7
na
ENSSSCG00000004854
ENSG00000104067
Tissue enhanced
Detected in all
lens:
182.7
na
ENSSSCG00000004921
ENSG00000081923
Low tissue specificity
Detected in many
na
ENSSSCG00000004945
Low tissue specificity
Detected in all
na
ENSSSCG00000004949
Low tissue specificity
Detected in many
na
ENSSSCG00000004963
ENSG00000140350
Low tissue specificity
Detected in all
na
ENSSSCG00000004970
Tissue enhanced
Detected in all
male glands:
238.9
na
ENSSSCG00000004983
Tissue enhanced
Detected in all
male glands:
80.7
salivary gland:
46.0
na
ENSSSCG00000005040
ENSG00000100522
Glucosamine 6-phosphate N-acetyltransferase
Tissue enhanced
Detected in all
male glands:
51.5
na
ENSSSCG00000005149
Tissue enhanced
Detected in many
choroid plexus:
20.0
na
ENSSSCG00000005169
Low tissue specificity
Detected in all
na
ENSSSCG00000005184
ENSG00000164975
Low tissue specificity
Detected in all
na
ENSSSCG00000005241
ENSG00000136682,ENSG00000147996,ENSG00000172785,ENSG00000196873,ENSG00000215126
Low tissue specificity
Detected in all
na
ENSSSCG00000005247
ENSG00000119139,ENSG00000285130
Tight junction protein ZO-2
Low tissue specificity
Detected in all
na
ENSSSCG00000005278
Tissue enhanced
Detected in many
smooth muscle:
96.0
na
ENSSSCG00000005282
Low tissue specificity
Detected in all
na
ENSSSCG00000005358
ENSG00000107338
Low tissue specificity
Detected in many
na
ENSSSCG00000005436
Low tissue specificity
Detected in all
na
ENSSSCG00000005440
ENSG00000119328
Low tissue specificity
Detected in all
na
ENSSSCG00000005441
ENSG00000070061
Low tissue specificity
Detected in all
na
ENSSSCG00000005453
Thioredoxin
Tissue enhanced
Detected in all
ovary:
149.3
na
ENSSSCG00000005457
ENSG00000198121
Lysophosphatidic acid receptor 1
Tissue enhanced
Detected in many
brain:
47.5
cartilage:
77.7
na
ENSSSCG00000005473
Group enriched
Detected in some
brain:
8.8
epididymis:
24.1
salivary gland:
17.5
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