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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Breast
Cartilage
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Cornea
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Dura mater
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Fallopian tube
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Heart
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ALDH3B1
ENSSSCG00000028501
ENSG00000006534
Aldehyde dehydrogenase family 3 member B1
Tissue enhanced
Detected in many
lung:
26.5
ALDH3B2
ENSSSCG00000026349
ENSG00000132746
Aldehyde dehydrogenase 3 family member B2
Tissue enhanced
Detected in many
mouth:
13.0
skin:
48.0
ALDH4A1
ENSSSCG00000024752
ENSG00000159423
Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
kidney:
61.1
liver:
78.9
ALDH5A1
ENSSSCG00000001090
ENSG00000112294
Succinate-semialdehyde dehydrogenase, mitochondrial
Tissue enhanced
Detected in all
liver:
38.4
ALDH6A1
ENSSSCG00000002357
ENSG00000119711
Aldehyde dehydrogenase 6 family member A1
Tissue enhanced
Detected in all
kidney:
85.2
ALDH7A1
ENSSSCG00000014247
ENSG00000164904
Aldehyde dehydrogenase 7 family member A1
Tissue enhanced
Detected in all
liver:
72.6
ALDH9A1
ENSSSCG00000006324
ENSG00000143149
Aldehyde dehydrogenase 9 family member A1
Tissue enhanced
Detected in all
liver:
69.0
ALDOC
ENSSSCG00000017759
ENSG00000109107
Fructose-bisphosphate aldolase C
Tissue enhanced
Detected in many
adipose tissue:
85.9
brain:
145.7
pineal gland:
49.1
retina:
64.5
ALG11
ENSSSCG00000009381
ENSG00000253710
ALG11, alpha-1,2-mannosyltransferase
Low tissue specificity
Detected in all
ALG12
ENSSSCG00000000980
ENSG00000182858
ALG12, alpha-1,6-mannosyltransferase
Low tissue specificity
Detected in all
ALG13
ENSSSCG00000012586
ENSG00000101901
ALG13, UDP-N-acetylglucosaminyltransferase subunit
Low tissue specificity
Detected in all
ALG14
ENSSSCG00000006885
ENSG00000172339
ALG14, UDP-N-acetylglucosaminyltransferase subunit
Low tissue specificity
Detected in all
ALG2
ENSSSCG00000005383
ENSG00000119523
Alpha-1,3/1,6-mannosyltransferase ALG2
Tissue enriched
Detected in all
male glands:
68.2
ALG3
ENSSSCG00000021319
ENSG00000214160
ALG3, alpha-1,3- mannosyltransferase
Low tissue specificity
Detected in all
ALG5
ENSSSCG00000009360
ENSG00000120697
Dolichyl-phosphate beta-glucosyltransferase
Tissue enhanced
Detected in all
male glands:
55.4
ALG6
ENSSSCG00000003815
ENSG00000088035
ALG6, alpha-1,3-glucosyltransferase
Low tissue specificity
Detected in all
ALG8
ENSSSCG00000014887
ENSG00000159063
ALG8, alpha-1,3-glucosyltransferase
Low tissue specificity
Detected in all
ALKAL1
ENSSSCG00000033922
ENSG00000196711
ALK and LTK ligand 1
Low tissue specificity
Detected in all
ALKAL2
ENSSSCG00000039057
ENSG00000189292
ALK and LTK ligand 2
Tissue enhanced
Detected in all
skin:
24.1
ALKBH1
ENSSSCG00000025906
ENSG00000100601
AlkB homolog 1, histone H2A dioxygenase
Low tissue specificity
Detected in all
ALKBH2
ENSSSCG00000009940
ENSG00000189046
AlkB homolog 2, alpha-ketoglutarate dependent dioxygenase
Low tissue specificity
Detected in all
ALKBH3
ENSSSCG00000040937
ENSG00000166199
AlkB homolog 3, alpha-ketoglutaratedependent dioxygenase
Low tissue specificity
Detected in all
ALKBH4
ENSSSCG00000029300
ENSG00000160993
AlkB homolog 4, lysine demethylase
Low tissue specificity
Detected in all
ALKBH5
ENSSSCG00000035120
ENSG00000091542
AlkB homolog 5, RNA demethylase
Low tissue specificity
Detected in all
ALKBH6
ENSSSCG00000002910
ENSG00000239382
AlkB homolog 6
Tissue enriched
Detected in all
choroid plexus:
92.0
ALKBH7
ENSSSCG00000024254
ENSG00000125652
AlkB homolog 7
Low tissue specificity
Detected in all
ALKBH8
ENSSSCG00000024628
ENSG00000137760
AlkB homolog 8, tRNA methyltransferase
Low tissue specificity
Detected in all
ALMS1
ENSSSCG00000037977
ENSG00000116127
ALMS1, centrosome and basal body associated protein
Tissue enhanced
Detected in all
testis:
85.4
ALOX15
ENSSSCG00000017923
ENSG00000161905
Arachidonate 15-lipoxygenase
Tissue enriched
Detected in many
mesothelial tissue:
243.3
ALOX5
ENSSSCG00000010404
ENSG00000012779
Arachidonate 5-lipoxygenase
Tissue enhanced
Detected in many
brain:
15.5
ALOX5AP
ENSSSCG00000009330
ENSG00000132965
Arachidonate 5-lipoxygenase-activating protein precursor
Tissue enhanced
Detected in many
brain:
30.0
testis:
30.4
ALPK3
ENSSSCG00000034070
ENSG00000136383
Alpha kinase 3
Tissue enhanced
Detected in all
skeletal muscle:
95.8
ALPL
ENSSSCG00000032607
ENSG00000162551
Alkaline phosphatase, liver/bone/kidney
Tissue enhanced
Detected in many
dura mater:
56.0
kidney:
77.7
ALS2
ENSSSCG00000016109
ENSG00000003393
ALS2, alsin Rho guanine nucleotide exchange factor
Tissue enhanced
Detected in all
brain:
52.3
lens:
46.4
ALS2CL
ENSSSCG00000021997
ENSG00000178038
ALS2 C-terminal like
Low tissue specificity
Detected in many
ALX3
ENSSSCG00000006812
ENSG00000156150
ALX homeobox 3
Tissue enhanced
Detected in many
mesothelial tissue:
16.1
penis:
41.2
ALX4
ENSSSCG00000040329
ENSG00000052850
ALX homeobox 4
Tissue enhanced
Detected in many
brain:
18.4
dura mater:
15.6
penis:
14.9
upper respiratory system:
13.5
AMACR
ENSSSCG00000016822
ENSG00000242110
Alpha-methylacyl-CoA racemase
Tissue enhanced
Detected in all
liver:
62.6
AMBRA1
ENSSSCG00000013262
ENSG00000110497
Autophagy and beclin 1 regulator 1
Low tissue specificity
Detected in all
AMCF-II
ENSSSCG00000008957
ENSG00000124875,ENSG00000163735
Alveolar macrophage chemotactic factor 2
Tissue enhanced
Detected in some
esophagus:
12.1
ovary:
12.9
upper respiratory system:
7.0
AMD1
ENSSSCG00000004392
ENSG00000123505
Adenosylmethionine decarboxylase 1
Low tissue specificity
Detected in all
AMELY
ENSSSCG00000031650
Amelogenin
Low tissue specificity
Detected in many
AMER1
ENSSSCG00000012361
ENSG00000184675
APC membrane recruitment protein 1
Low tissue specificity
Detected in all
AMFR
ENSSSCG00000002822
ENSG00000159461
Autocrine motility factor receptor
Low tissue specificity
Detected in all
AMIGO1
ENSSSCG00000034883
ENSG00000181754
Adhesion molecule with Ig like domain 1
Low tissue specificity
Detected in all
AMIGO2
ENSSSCG00000000810
ENSG00000139211
Adhesion molecule with Ig like domain 2
Tissue enhanced
Detected in many
ovary:
33.6
AMIGO3
ENSSSCG00000011389
ENSG00000176020
Mannose-1-phosphate guanyltransferase beta
Tissue enhanced
Detected in all
male glands:
37.8
AMMECR1
ENSSSCG00000037591
ENSG00000101935
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
Low tissue specificity
Detected in all
AMMECR1L
ENSSSCG00000028633
ENSG00000144233
AMMECR1 like
Low tissue specificity
Detected in all
AMN1
ENSSSCG00000034407
ENSG00000151743
Antagonist of mitotic exit network 1 homolog
Low tissue specificity
Detected in all
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