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Keyword
Chromosome
1
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8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
G6PC3
ENSSSCG00000017365
ENSG00000141349
Glucose-6-phosphatase catalytic subunit 3
Low tissue specificity
Detected in all
G6PD
ENSSSCG00000025108
ENSG00000160211
Glucose-6-phosphate dehydrogenase
Low tissue specificity
Detected in all
GAA
ENSSSCG00000017156
ENSG00000171298
Glucosidase alpha, acid
Low tissue specificity
Detected in all
GAB1
ENSSSCG00000009048
ENSG00000109458
GRB2 associated binding protein 1
Tissue enhanced
Detected in all
brain:
93.3
GABARAP
ENSSSCG00000017936
ENSG00000170296
Gamma-aminobutyric acid receptor-associated protein
Low tissue specificity
Detected in all
GABARAPL1
ENSSSCG00000000645
ENSG00000139112
Gamma-aminobutyric acid receptor-associated protein-like 1
Tissue enhanced
Detected in all
lens:
99.9
GABARAPL2
ENSSSCG00000002707
ENSG00000034713
GABA type A receptor associated protein like 2
Tissue enhanced
Detected in all
brain:
60.7
lens:
74.1
pineal gland:
52.4
GABBR1
ENSSSCG00000001242
ENSG00000204681
Gamma-aminobutyric acid type B receptor subunit 1 precursor
Tissue enhanced
Detected in all
brain:
74.5
GABPA
ENSSSCG00000037655
ENSG00000154727
GA binding protein transcription factor alpha subunit
Low tissue specificity
Detected in all
GABPB1
ENSSSCG00000004645
ENSG00000104064
GA binding protein transcription factor beta subunit 1
Low tissue specificity
Detected in all
GABRA4
ENSSSCG00000030515
ENSG00000109158
Gamma-aminobutyric acid type A receptor alpha4 subunit
Tissue enriched
Detected in some
brain:
34.0
GABRG3
ENSSSCG00000035584
ENSG00000182256
Gamma-aminobutyric acid type A receptor gamma3 subunit
Tissue enhanced
Detected in some
brain:
17.5
cornea:
10.3
thyroid gland:
7.7
GABRP
ENSSSCG00000021902
ENSG00000094755
Gamma-aminobutyric acid type A receptor pi subunit
Tissue enhanced
Detected in all
endometrium:
40.2
GADD45A
ENSSSCG00000037066
ENSG00000116717
Growth arrest and DNA damage-inducible protein GADD45 alpha
Tissue enhanced
Detected in many
lens:
32.5
GADD45B
ENSSSCG00000022689
ENSG00000099860
Growth arrest and DNA damage inducible beta
Low tissue specificity
Detected in all
GAK
ENSSSCG00000021289
ENSG00000178950
Cyclin G associated kinase
Low tissue specificity
Detected in all
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GAL3ST4
ENSSSCG00000007648
ENSG00000197093
Galactose-3-O-sulfotransferase 4
Low tissue specificity
Detected in all
GALC
ENSSSCG00000027865
ENSG00000054983
Galactocerebrosidase
Tissue enhanced
Detected in all
testis:
25.0
GALE
ENSSSCG00000027827
ENSG00000117308
UDP-galactose-4-epimerase
Tissue enhanced
Detected in all
male glands:
50.1
stomach:
34.9
GALK1
ENSSSCG00000017203
ENSG00000108479
Galactokinase 1
Low tissue specificity
Detected in all
GALK2
ENSSSCG00000004651
ENSG00000156958
Galactokinase 2
Low tissue specificity
Detected in all
GALM
ENSSSCG00000008486
ENSG00000143891
Aldose 1-epimerase
Low tissue specificity
Detected in all
GALNS
ENSSSCG00000002645
ENSG00000141012
N-acetylgalactosamine-6-sulfatase precursor
Low tissue specificity
Detected in all
GALNT1
ENSSSCG00000003743
ENSG00000141429
Polypeptide N-acetylgalactosaminyltransferase 1
Low tissue specificity
Detected in all
GALNT10
ENSSSCG00000017072
ENSG00000164574
Polypeptide N-acetylgalactosaminyltransferase 10
Low tissue specificity
Detected in all
GALNT11
ENSSSCG00000016430
ENSG00000178234
Polypeptide N-acetylgalactosaminyltransferase 11
Low tissue specificity
Detected in all
GALNT15
ENSSSCG00000011195
ENSG00000131386
Polypeptide N-acetylgalactosaminyltransferase 15 precursor
Tissue enhanced
Detected in all
cartilage:
57.6
penis:
38.6
GALNT18
ENSSSCG00000013403
ENSG00000110328
Polypeptide N-acetylgalactosaminyltransferase 18
Tissue enriched
Detected in many
cartilage:
84.5
GALNT2
ENSSSCG00000010185
ENSG00000143641
Polypeptide N-acetylgalactosaminyltransferase 2
Tissue enhanced
Detected in all
male glands:
70.3
GALNT3
ENSSSCG00000015907
ENSG00000115339
Polypeptide N-acetylgalactosaminyltransferase 3
Tissue enhanced
Detected in many
male glands:
44.6
testis:
29.6
GALNT5
ENSSSCG00000026146
ENSG00000136542
Polypeptide N-acetylgalactosaminyltransferase 5
Tissue enhanced
Detected in many
esophagus:
19.6
salivary gland:
22.7
GALNT7
ENSSSCG00000009705
ENSG00000109586
Polypeptide N-acetylgalactosaminyltransferase 7
Tissue enhanced
Detected in many
small intestine:
42.5
stomach:
42.4
GALR1
ENSSSCG00000036984
ENSG00000166573
Galanin receptor 1
Tissue enhanced
Detected in many
choroid plexus:
23.4
urinary bladder:
19.0
GALR2
ENSSSCG00000017189
ENSG00000182687
Galanin receptor 2
Tissue enhanced
Detected in some
brain:
8.7
ovary:
6.4
GALR3
ENSSSCG00000000121
ENSG00000128310
Galanin receptor 3
Low tissue specificity
Detected in many
GALT
ENSSSCG00000010969
ENSG00000213930
Galactose-1-phosphate uridylyltransferase
Low tissue specificity
Detected in all
GAMT
ENSSSCG00000023142
ENSG00000130005
Guanidinoacetate N-methyltransferase
Tissue enriched
Detected in many
liver:
108.3
GAN
ENSSSCG00000002690
ENSG00000261609
Gigaxonin
Low tissue specificity
Detected in all
GANAB
ENSSSCG00000030653
ENSG00000089597
Neutral alpha-glucosidase AB precursor
Low tissue specificity
Detected in all
GANC
ENSSSCG00000004729
ENSG00000214013
Glucosidase alpha, neutral C
Tissue enhanced
Detected in all
skeletal muscle:
47.3
GAP43
ENSSSCG00000031244
ENSG00000172020
Neuromodulin
Tissue enriched
Detected in many
brain:
43.8
GAPDHS
ENSSSCG00000002888
ENSG00000105679
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tissue enriched
Detected in many
testis:
119.2
GAPT
ENSSSCG00000035276
ENSG00000175857
GRB2 binding adaptor protein, transmembrane
Low tissue specificity
Detected in all
GAPVD1
ENSSSCG00000005602
ENSG00000165219
GTPase activating protein and VPS9 domains 1
Low tissue specificity
Detected in all
GAR1
ENSSSCG00000009137
ENSG00000109534
GAR1 ribonucleoprotein
Low tissue specificity
Detected in all
GAREM1
ENSSSCG00000003731
ENSG00000141441
GRB2 associated regulator of MAPK1 subtype 1
Tissue enhanced
Detected in all
cartilage:
48.6
GARNL3
ENSSSCG00000005609
ENSG00000136895
GTPase activating Rap/RanGAP domain like 3
Tissue enhanced
Detected in many
brain:
20.6
liver:
30.3
salivary gland:
21.8
GARS
ENSSSCG00000016677
ENSG00000106105
Glycyl-tRNA synthetase
Low tissue specificity
Detected in all
GART
ENSSSCG00000030677
ENSG00000159131
Phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase
Low tissue specificity
Detected in all
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