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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CHD4
ENSSSCG00000000697
ENSG00000111642
Chromodomain helicase DNA binding protein 4
Low tissue specificity
Detected in all
CHD6
ENSSSCG00000007360
ENSG00000124177
Chromodomain helicase DNA binding protein 6
Low tissue specificity
Detected in all
CHD7
ENSSSCG00000006231
ENSG00000171316
Chromodomain helicase DNA binding protein 7
Low tissue specificity
Detected in all
CHD8
ENSSSCG00000002127
ENSG00000100888
Chromodomain helicase DNA binding protein 8
Low tissue specificity
Detected in all
CHD9
ENSSSCG00000033591
ENSG00000177200
Chromodomain helicase DNA binding protein 9
Low tissue specificity
Detected in all
CHDH
ENSSSCG00000011456
ENSG00000016391
Choline dehydrogenase
Tissue enhanced
Detected in many
liver:
44.2
CHEK2
ENSSSCG00000034864
ENSG00000183765
Serine/threonine-protein kinase Chk2
Low tissue specificity
Detected in all
CHERP
ENSSSCG00000013860
ENSG00000085872
Calcium homeostasis endoplasmic reticulum protein
Low tissue specificity
Detected in all
CHFR
ENSSSCG00000009732
ENSG00000072609
Checkpoint with forkhead and ring finger domains
Low tissue specificity
Detected in all
CHI3L2
ENSSSCG00000006796
ENSG00000064886
Chitinase 3 like 2
Low tissue specificity
Detected in all
CHIC1
ENSSSCG00000012416
ENSG00000204116
Cysteine rich hydrophobic domain 1
Low tissue specificity
Detected in many
CHIC2
ENSSSCG00000032645
ENSG00000109220
Cysteine rich hydrophobic domain 2
Tissue enhanced
Detected in all
lymphoid tissue:
39.5
CHID1
ENSSSCG00000012837
ENSG00000177830
Chitinase domain-containing protein 1 precursor
Low tissue specificity
Detected in all
CHKA
ENSSSCG00000012889
ENSG00000110721
Choline kinase alpha
Tissue enhanced
Detected in all
male glands:
41.6
CHKB
ENSSSCG00000036154
ENSG00000100288
Choline/ethanolamine kinase
Low tissue specificity
Detected in all
CHL1
ENSSSCG00000011524
ENSG00000134121
Cell adhesion molecule L1 like
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
36.4
vagus nerve:
36.8
CHM
ENSSSCG00000012463
ENSG00000188419
CHM, Rab escort protein 1
Tissue enhanced
Detected in all
lens:
51.9
CHMP1A
ENSSSCG00000023677
ENSG00000131165
Charged multivesicular body protein 1a
Low tissue specificity
Detected in all
CHMP2A
ENSSSCG00000029362
ENSG00000130724
Charged multivesicular body protein 2A
Low tissue specificity
Detected in all
CHMP2B
ENSSSCG00000011997
ENSG00000083937
Charged multivesicular body protein 2b
Low tissue specificity
Detected in all
CHMP4A
ENSSSCG00000033432
ENSG00000254505
Charged multivesicular body protein 4A
Low tissue specificity
Detected in many
CHMP4B
ENSSSCG00000007272
ENSG00000101421
Charged multivesicular body protein 4B
Low tissue specificity
Detected in all
CHMP4C
ENSSSCG00000025980
ENSG00000164695
Charged multivesicular body protein 4c
Low tissue specificity
Detected in all
CHMP5
ENSSSCG00000010995
ENSG00000086065
Charged multivesicular body protein 5
Low tissue specificity
Detected in all
CHMP6
ENSSSCG00000017140
ENSG00000176108
Charged multivesicular body protein 6
Low tissue specificity
Detected in all
CHMP7
ENSSSCG00000033113
ENSG00000147457
Charged multivesicular body protein 7
Low tissue specificity
Detected in all
CHODL
ENSSSCG00000012018
ENSG00000154645
Chondrolectin
Tissue enhanced
Detected in all
brain:
67.6
CHORDC1
ENSSSCG00000014934
ENSG00000110172
Cysteine and histidine-rich domain-containing protein 1
Low tissue specificity
Detected in all
CHP1
ENSSSCG00000004751
ENSG00000187446
Calcineurin like EF-hand protein 1
Tissue enhanced
Detected in all
large intestine:
87.5
CHP2
ENSSSCG00000034827
ENSG00000166869
Calcineurin like EF-hand protein 2
Tissue enhanced
Detected in all
large intestine:
42.1
small intestine:
34.1
CHPF
ENSSSCG00000021610
ENSG00000123989
Chondroitin polymerizing factor
Tissue enhanced
Detected in all
cartilage:
72.9
CHPF2
ENSSSCG00000016436
ENSG00000033100
Chondroitin polymerizing factor 2
Low tissue specificity
Detected in all
CHPT1
ENSSSCG00000000864
ENSG00000111666
Choline phosphotransferase 1
Tissue enhanced
Detected in all
adipose tissue:
46.0
liver:
72.5
CHRAC1
ENSSSCG00000005933
ENSG00000104472
Chromatin accessibility complex 1
Low tissue specificity
Detected in all
CHRD
ENSSSCG00000025270
ENSG00000090539
Chordin
Tissue enriched
Detected in many
liver:
64.9
CHRM5
ENSSSCG00000036662
ENSG00000184984
Cholinergic receptor muscarinic 5
Tissue enriched
Detected in some
brain:
18.9
CHRNA1
ENSSSCG00000015969
ENSG00000138435
Cholinergic receptor nicotinic alpha 1 subunit
Low tissue specificity
Detected in all
CHRNA2
ENSSSCG00000009665
ENSG00000120903
Cholinergic receptor nicotinic alpha 2 subunit
Tissue enhanced
Detected in many
brain:
21.7
liver:
13.8
CHRNA3
ENSSSCG00000001752
ENSG00000080644
Cholinergic receptor nicotinic alpha 3 subunit
Low tissue specificity
Detected in all
CHRNA6
ENSSSCG00000023338
ENSG00000147434
Cholinergic receptor nicotinic alpha 6 subunit
Group enriched
Detected in all
brain:
55.5
retina:
16.6
CHRNB1
ENSSSCG00000030263
ENSG00000170175
Cholinergic receptor nicotinic beta 1 subunit
Low tissue specificity
Detected in all
CHRNG
ENSSSCG00000016288
ENSG00000196811
Cholinergic receptor nicotinic gamma subunit
Tissue enhanced
Detected in many
mouth:
8.9
CHST1
ENSSSCG00000013273
ENSG00000175264
Carbohydrate sulfotransferase 1
Tissue enhanced
Detected in many
brain:
37.4
cornea:
15.8
CHST10
ENSSSCG00000008175
ENSG00000115526
Carbohydrate sulfotransferase 10
Tissue enhanced
Detected in many
brain:
51.7
CHST11
ENSSSCG00000000837
ENSG00000171310
Carbohydrate sulfotransferase 11
Tissue enhanced
Detected in many
cartilage:
65.0
CHST12
ENSSSCG00000007567
ENSG00000136213
Carbohydrate sulfotransferase 12
Low tissue specificity
Detected in all
CHST14
ENSSSCG00000004771
ENSG00000169105
Carbohydrate sulfotransferase 14
Low tissue specificity
Detected in all
CHST15
ENSSSCG00000029482
ENSG00000182022
Carbohydrate sulfotransferase 15
Tissue enhanced
Detected in many
cartilage:
47.5
lymphoid tissue:
44.7
CHST2
ENSSSCG00000022031
ENSG00000175040
Carbohydrate sulfotransferase 2
Tissue enhanced
Detected in many
brain:
34.6
thyroid gland:
23.3
CHST3
ENSSSCG00000023662
ENSG00000122863
Carbohydrate sulfotransferase 3
Tissue enhanced
Detected in many
cartilage:
38.4
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