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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
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Heart
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Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CD14
ENSSSCG00000014369
ENSG00000170458
Monocyte differentiation antigen CD14 precursor
Tissue enhanced
Detected in all
liver:
74.2
synovial tissue:
43.7
CD151
ENSSSCG00000012840
ENSG00000177697
CD151 antigen
Low tissue specificity
Detected in all
CD164
ENSSSCG00000004414
ENSG00000135535
CD164 molecule
Tissue enriched
Detected in all
male glands:
185.5
CD164L2
ENSSSCG00000003575
ENSG00000174950
CD164 molecule like 2
Low tissue specificity
Detected in all
CD19
ENSSSCG00000007807
ENSG00000177455
B-lymphocyte antigen CD19 precursor
Tissue enhanced
Detected in all
lymphoid tissue:
46.0
CD1D
ENSSSCG00000006452
ENSG00000158473
CD1B antigen precursor
Tissue enriched
Detected in all
lymphoid tissue:
107.9
CD200
ENSSSCG00000027820
ENSG00000091972
CD200 molecule
Tissue enhanced
Detected in all
vagus nerve:
38.6
CD207
ENSSSCG00000008319
ENSG00000116031
C-type lectin domain family 4 member K
Tissue enhanced
Detected in many
retina:
25.7
skin:
18.6
CD248
ENSSSCG00000029949
ENSG00000174807
CD248 molecule
Tissue enhanced
Detected in many
mesothelial tissue:
60.5
synovial tissue:
66.7
CD274
ENSSSCG00000005211
ENSG00000120217
Programmed cell death 1 ligand 1 precursor
Low tissue specificity
Detected in all
CD276
ENSSSCG00000001917
ENSG00000103855
CD276 molecule
Tissue enhanced
Detected in all
ovary:
56.2
CD28
ENSSSCG00000028561
ENSG00000178562
T-cell-specific surface glycoprotein CD28 precursor
Low tissue specificity
Detected in all
CD2BP2
ENSSSCG00000007791
ENSG00000169217
CD2 cytoplasmic tail binding protein 2
Low tissue specificity
Detected in all
CD300C
ENSSSCG00000017236
CMRF35-like molecule 6 precursor
Tissue enhanced
Detected in many
synovial tissue:
14.7
CD302
ENSSSCG00000036050
ENSG00000241399
CD302 antigen
Low tissue specificity
Detected in many
CD320
ENSSSCG00000032833
ENSG00000167775
CD320 molecule
Tissue enhanced
Detected in all
fallopian tube:
35.4
male glands:
40.1
CD34
ENSSSCG00000039946
ENSG00000174059
Hematopoietic progenitor cell antigen CD34 precursor
Low tissue specificity
Detected in many
CD3D
ENSSSCG00000015093
ENSG00000167286
T-cell surface glycoprotein CD3 delta chain
Tissue enriched
Detected in all
lymphoid tissue:
95.4
CD3EAP
ENSSSCG00000020754
ENSG00000117877
CD3e molecule associated protein
Low tissue specificity
Detected in all
CD3G
ENSSSCG00000015094
ENSG00000160654
T-cell surface glycoprotein CD3 gamma chain
Tissue enhanced
Detected in all
lymphoid tissue:
57.1
CD40
ENSSSCG00000035078
ENSG00000101017
Tumor necrosis factor receptor superfamily member 5
Tissue enhanced
Detected in all
lens:
32.7
lymphoid tissue:
21.3
CD44
ENSSSCG00000013297
ENSG00000026508
CD44 molecule (Indian blood group)
Tissue enhanced
Detected in many
male glands:
96.2
salivary gland:
142.4
CD47
ENSSSCG00000011942
ENSG00000196776
Leukocyte surface antigen CD47
Low tissue specificity
Detected in all
CD5
ENSSSCG00000013115
ENSG00000110448
T-cell surface glycoprotein CD5 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
stomach:
15.4
CD53
ENSSSCG00000006800
ENSG00000143119
CD53 molecule
Tissue enhanced
Detected in all
lymphoid tissue:
59.8
CD58
ENSSSCG00000006738
ENSG00000116815
Lymphocyte function-associated antigen 3 precursor
Low tissue specificity
Detected in all
CD6
ENSSSCG00000013111
ENSG00000013725
CD6 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
35.4
stomach:
30.2
CD63
ENSSSCG00000000361
ENSG00000135404
CD63 molecule
Low tissue specificity
Detected in all
CD68
ENSSSCG00000017956
ENSG00000129226
Macrosialin precursor
Tissue enhanced
Detected in many
lymphoid tissue:
102.3
synovial tissue:
49.3
CD70
ENSSSCG00000031115
ENSG00000125726
CD70 antigen
Low tissue specificity
Detected in all
CD74
ENSSSCG00000033262
ENSG00000019582
CD74 antigen
Tissue enhanced
Detected in all
lymphoid tissue:
240.1
CD79A
ENSSSCG00000033684
ENSG00000105369
B-cell antigen receptor complex-associated protein alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
59.2
CD80
ENSSSCG00000011899
ENSG00000121594
T-lymphocyte activation antigen CD80 precursor
Low tissue specificity
Detected in all
CD81
ENSSSCG00000039243
ENSG00000110651
CD81 antigen
Low tissue specificity
Detected in all
CD82
ENSSSCG00000029521
ENSG00000085117
CD82 antigen
Low tissue specificity
Detected in all
CD83
ENSSSCG00000021576
ENSG00000112149
CD83 molecule
Low tissue specificity
Detected in all
CD84
ENSSSCG00000006381
ENSG00000066294
CD84 molecule
Tissue enhanced
Detected in all
lymphoid tissue:
37.6
CD86
ENSSSCG00000011877
ENSG00000114013
T-lymphocyte activation antigen CD86 precursor
Low tissue specificity
Detected in all
CD8A
ENSSSCG00000008217
ENSG00000153563
T-cell surface glycoprotein CD8 alpha chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
80.2
CD8B
ENSSSCG00000008213
ENSG00000172116,ENSG00000254126
T-cell surface glycoprotein CD8 beta chain precursor
Tissue enriched
Detected in all
lymphoid tissue:
104.7
CD9
ENSSSCG00000022230
ENSG00000010278
CD9 antigen
Low tissue specificity
Detected in all
CD96
ENSSSCG00000023993
ENSG00000153283
T-cell surface protein tactile
Tissue enhanced
Detected in many
large intestine:
22.3
lymphoid tissue:
27.2
CD99
ENSSSCG00000039894
ENSG00000002586
CD99 molecule (Xg blood group)
Low tissue specificity
Detected in all
CD99L2
ENSSSCG00000012744
ENSG00000102181
CD99 molecule like 2
Tissue enhanced
Detected in all
lens:
50.5
CDA
ENSSSCG00000021259
ENSG00000158825
Cytidine deaminase
Tissue enhanced
Detected in many
cartilage:
51.0
male glands:
51.9
CDADC1
ENSSSCG00000031598
ENSG00000102543
Cytidine and dCMP deaminase domain containing 1
Low tissue specificity
Detected in all
CDAN1
ENSSSCG00000004719
ENSG00000140326
Codanin 1
Low tissue specificity
Detected in all
CDC123
ENSSSCG00000011112
ENSG00000151465
Cell division cycle protein 123 homolog
Tissue enhanced
Detected in all
pineal gland:
57.3
CDC14A
ENSSSCG00000006864
ENSG00000079335
Cell division cycle 14A
Low tissue specificity
Detected in all
CDC14B
ENSSSCG00000027557
ENSG00000081377
Cell division cycle 14B
Low tissue specificity
Detected in all
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