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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC22
ENSSSCG00000012297
ENSG00000101997
Coiled-coil domain containing 22
Low tissue specificity
Detected in all
CCDC24
ENSSSCG00000034727
ENSG00000159214
Coiled-coil domain containing 24
Low tissue specificity
Detected in all
CCDC25
ENSSSCG00000024972
ENSG00000147419
Coiled-coil domain-containing protein 25
Low tissue specificity
Detected in all
CCDC28A
ENSSSCG00000004148
ENSG00000024862
Coiled-coil domain-containing protein 28A
Tissue enhanced
Detected in all
male glands:
33.4
CCDC28B
ENSSSCG00000031514
ENSG00000160050
Coiled-coil domain containing 28B
Low tissue specificity
Detected in all
CCDC3
ENSSSCG00000011110
ENSG00000151468
Coiled-coil domain containing 3
Tissue enhanced
Detected in many
mesothelial tissue:
62.2
upper respiratory system:
64.7
CCDC32
ENSSSCG00000038033
ENSG00000128891
Coiled-coil domain containing 32
Low tissue specificity
Detected in all
CCDC34
ENSSSCG00000013336
ENSG00000109881
Coiled-coil domain containing 34
Tissue enhanced
Detected in all
testis:
33.7
CCDC36
ENSSSCG00000011376
ENSG00000173421
Coiled-coil domain containing 36
Tissue enhanced
Detected in many
testis:
65.9
CCDC47
ENSSSCG00000028698
ENSG00000108588
Coiled-coil domain containing 47
Low tissue specificity
Detected in all
CCDC50
ENSSSCG00000036423
ENSG00000152492
Coiled-coil domain containing 50
Low tissue specificity
Detected in all
CCDC51
ENSSSCG00000011350
ENSG00000164051
Coiled-coil domain containing 51
Low tissue specificity
Detected in all
CCDC59
ENSSSCG00000038987
ENSG00000133773
Thyroid transcription factor 1-associated protein 26
Low tissue specificity
Detected in all
CCDC6
ENSSSCG00000010211
ENSG00000108091
Coiled-coil domain containing 6
Tissue enhanced
Detected in all
cervix:
87.3
lens:
97.5
CCDC60
ENSSSCG00000009842
ENSG00000183273
Coiled-coil domain containing 60
Tissue enhanced
Detected in many
skeletal muscle:
30.3
testis:
39.1
CCDC61
ENSSSCG00000003100
ENSG00000104983
Coiled-coil domain containing 61
Low tissue specificity
Detected in all
CCDC62
ENSSSCG00000009787
ENSG00000130783
Coiled-coil domain containing 62
Tissue enriched
Detected in all
testis:
68.3
CCDC65
ENSSSCG00000000179
ENSG00000139537
Coiled-coil domain containing 65
Tissue enhanced
Detected in many
fallopian tube:
21.2
testis:
40.1
CCDC66
ENSSSCG00000021439
ENSG00000180376
Coiled-coil domain containing 66
Low tissue specificity
Detected in all
CCDC68
ENSSSCG00000004534
ENSG00000166510
Coiled-coil domain containing 68
Tissue enhanced
Detected in all
male glands:
26.2
CCDC69
ENSSSCG00000040411
ENSG00000198624
Coiled-coil domain containing 69
Tissue enhanced
Detected in many
adipose tissue:
56.7
lymphoid tissue:
64.7
CCDC71
ENSSSCG00000011378
ENSG00000177352
Coiled-coil domain containing 71
Low tissue specificity
Detected in all
CCDC71L
ENSSSCG00000015436
ENSG00000253276
Coiled-coil domain containing 71 like
Tissue enhanced
Detected in many
adrenal gland:
42.2
CCDC73
ENSSSCG00000026433
ENSG00000186714
Coiled-coil domain containing 73
Tissue enhanced
Detected in many
testis:
13.1
CCDC77
ENSSSCG00000000751
ENSG00000120647
Coiled-coil domain containing 77
Low tissue specificity
Detected in all
CCDC8
ENSSSCG00000033830
ENSG00000169515
Coiled-coil domain containing 8
Low tissue specificity
Detected in all
CCDC80
ENSSSCG00000011928
ENSG00000091986
Coiled-coil domain containing 80
Tissue enhanced
Detected in many
cartilage:
103.3
lens:
84.5
mesothelial tissue:
100.8
CCDC81
ENSSSCG00000014917
ENSG00000149201
Coiled-coil domain containing 81
Low tissue specificity
Detected in all
CCDC82
ENSSSCG00000014972
ENSG00000149231
Coiled-coil domain containing 82
Low tissue specificity
Detected in all
CCDC84
ENSSSCG00000015102
ENSG00000186166
Coiled-coil domain-containing protein 84
Low tissue specificity
Detected in all
CCDC85B
ENSSSCG00000012968
ENSG00000175602
Coiled-coil domain containing 85B
Tissue enhanced
Detected in all
brain:
40.7
lens:
68.3
CCDC85C
ENSSSCG00000037284
ENSG00000205476
Coiled-coil domain containing 85C
Tissue enhanced
Detected in all
lens:
33.8
CCDC86
ENSSSCG00000013105
ENSG00000110104
Coiled-coil domain containing 86
Low tissue specificity
Detected in all
CCDC87
ENSSSCG00000012933
ENSG00000182791
Coiled-coil domain containing 87
Tissue enriched
Detected in many
testis:
37.6
CCDC89
ENSSSCG00000014908
ENSG00000179071
Coiled-coil domain containing 89
Group enriched
Detected in many
stomach:
26.1
testis:
40.6
CCDC9
ENSSSCG00000024240
ENSG00000105321
Coiled-coil domain containing 9
Tissue enhanced
Detected in all
cartilage:
63.8
CCDC90B
ENSSSCG00000014903
ENSG00000137500
Coiled-coil domain containing 90B
Low tissue specificity
Detected in all
CCDC91
ENSSSCG00000024232
ENSG00000123106
Coiled-coil domain-containing protein 91
Low tissue specificity
Detected in all
CCDC92
ENSSSCG00000009764
ENSG00000119242
Coiled-coil domain containing 92
Tissue enhanced
Detected in all
brain:
28.6
testis:
50.6
CCDC93
ENSSSCG00000015714
ENSG00000125633
Coiled-coil domain containing 93
Low tissue specificity
Detected in all
CCDC94
ENSSSCG00000013499
ENSG00000105248
Coiled-coil domain containing 94
Low tissue specificity
Detected in all
CCDC97
ENSSSCG00000003016
ENSG00000142039
Coiled-coil domain containing 97
Low tissue specificity
Detected in all
CCDC9B
ENSSSCG00000023975
ENSG00000188549
Coiled-coil domain containing 9B
Low tissue specificity
Detected in all
CCHCR1
ENSSSCG00000001391
ENSG00000204536
Coiled-coil alpha-helical rod protein 1
Tissue enriched
Detected in many
testis:
62.1
CCKAR
ENSSSCG00000023501
ENSG00000163394
Cholecystokinin A receptor
Tissue enhanced
Detected in all
gallbladder:
30.0
small intestine:
18.8
CCKBR
ENSSSCG00000033806
ENSG00000110148
Cholecystokinin B receptor
Group enriched
Detected in many
brain:
22.1
fallopian tube:
9.6
CCL11
ENSSSCG00000040648
ENSG00000108700
C-C motif chemokine 8 precursor
Low tissue specificity
Detected in all
CCL16
ENSSSCG00000040940
ENSG00000275152
C-C motif chemokine ligand 16
Tissue enriched
Detected in many
liver:
145.0
CCL19
ENSSSCG00000010966
ENSG00000172724
C-C motif chemokine 19 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
113.4
CCL2
ENSSSCG00000017723
ENSG00000108691
C-C motif chemokine 2
Tissue enhanced
Detected in many
aorta:
52.5
ovary:
88.5
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