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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TRMT5
ENSSSCG00000024529
ENSG00000126814
TRNA methyltransferase 5
Low tissue specificity
Detected in all
TRMT6
ENSSSCG00000007046
ENSG00000089195
TRNA methyltransferase 6
Low tissue specificity
Detected in all
TRMT61A
ENSSSCG00000034738
ENSG00000166166
TRNA methyltransferase 61A
Tissue enhanced
Detected in all
liver:
38.9
TRMT61B
ENSSSCG00000030147
ENSG00000171103
TRNA methyltransferase 61B
Low tissue specificity
Detected in all
TRMT9B
ENSSSCG00000006969
ENSG00000250305
TRNA methyltransferase 9B (putative)
Tissue enhanced
Detected in many
brain:
36.7
heart:
22.8
TRMU
ENSSSCG00000000007
ENSG00000100416
TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Low tissue specificity
Detected in all
TRNAU1AP
ENSSSCG00000030284
ENSG00000180098
TRNA selenocysteine 1 associated protein 1
Low tissue specificity
Detected in all
TRNT1
ENSSSCG00000011529
ENSG00000072756
TRNA nucleotidyl transferase 1
Tissue enhanced
Detected in all
lens:
45.0
TROAP
ENSSSCG00000023176
ENSG00000135451
Trophinin associated protein
Tissue enhanced
Detected in many
lymphoid tissue:
19.7
TROVE2
ENSSSCG00000032055
ENSG00000116747
TROVE domain family member 2
Low tissue specificity
Detected in all
TRPA1
ENSSSCG00000006186
ENSG00000104321
Transient receptor potential cation channel subfamily A member 1
Tissue enhanced
Detected in many
large intestine:
18.2
urinary bladder:
25.5
TRPC1
ENSSSCG00000011681
ENSG00000144935
Short transient receptor potential channel 1
Tissue enhanced
Detected in all
retina:
51.3
TRPC4
ENSSSCG00000009362
ENSG00000133107
Short transient receptor potential channel 4
Tissue enhanced
Detected in many
brain:
20.4
smooth muscle:
35.1
TRPC4AP
ENSSSCG00000007289
ENSG00000100991
Transient receptor potential cation channel subfamily C member 4 associated protein
Low tissue specificity
Detected in all
TRPC5
ENSSSCG00000012587
ENSG00000072315
Short transient receptor potential channel 5
Tissue enriched
Detected in some
brain:
16.3
TRPM4
ENSSSCG00000022672
ENSG00000130529
Transient receptor potential cation channel subfamily M member 4
Tissue enhanced
Detected in many
stomach:
82.0
TRPM6
ENSSSCG00000005269
ENSG00000119121
Transient receptor potential cation channel subfamily M member 6
Tissue enhanced
Detected in many
kidney:
30.9
TRPM7
ENSSSCG00000004636
ENSG00000092439
Transient receptor potential cation channel subfamily M member 7
Low tissue specificity
Detected in all
TRPS1
ENSSSCG00000006018
ENSG00000104447
Transcriptional repressor GATA binding 1
Tissue enhanced
Detected in all
cartilage:
75.0
male glands:
80.1
TRPT1
ENSSSCG00000013040
ENSG00000149743
TRNA phosphotransferase 1
Low tissue specificity
Detected in all
TRPV1
ENSSSCG00000017863
ENSG00000196689
Transient receptor potential cation channel subfamily V member 1
Low tissue specificity
Detected in some
TRPV2
ENSSSCG00000018032
ENSG00000187688
Transient receptor potential cation channel subfamily V member 2
Tissue enhanced
Detected in many
lymphoid tissue:
31.0
stomach:
32.3
TRPV4
ENSSSCG00000009929
ENSG00000111199
Transient receptor potential cation channel subfamily V member 4
Tissue enriched
Detected in many
cartilage:
99.6
TRPV5
ENSSSCG00000016469
ENSG00000127412
Transient receptor potential cation channel subfamily V member 5
Tissue enhanced
Detected in many
lymphoid tissue:
22.1
male glands:
35.6
TRRAP
ENSSSCG00000007606
ENSG00000196367
Transformation/transcription domain associated protein
Low tissue specificity
Detected in all
TRUB1
ENSSSCG00000010653
ENSG00000165832
TruB pseudouridine synthase family member 1
Low tissue specificity
Detected in all
TRUB2
ENSSSCG00000005645
ENSG00000167112
TruB pseudouridine synthase family member 2
Low tissue specificity
Detected in all
TSC2
ENSSSCG00000008040
ENSG00000103197
TSC complex subunit 2
Low tissue specificity
Detected in all
TSC22D1
ENSSSCG00000009422
ENSG00000102804
TSC22 domain family member 1
Low tissue specificity
Detected in all
TSC22D2
ENSSSCG00000011708
ENSG00000196428
TSC22 domain family member 2
Low tissue specificity
Detected in all
TSC22D3
ENSSSCG00000030241
ENSG00000157514
TSC22 domain family protein 3
Low tissue specificity
Detected in all
TSC22D4
ENSSSCG00000025164
ENSG00000166925
TSC22 domain family member 4
Tissue enhanced
Detected in all
brain:
63.6
TSEN2
ENSSSCG00000011580
ENSG00000154743
TRNA splicing endonuclease subunit 2
Low tissue specificity
Detected in all
TSEN34
ENSSSCG00000003268
ENSG00000170892
TRNA splicing endonuclease subunit 34
Low tissue specificity
Detected in all
TSEN54
ENSSSCG00000036852
ENSG00000182173
TRNA splicing endonuclease subunit 54
Low tissue specificity
Detected in all
TSFM
ENSSSCG00000037767
ENSG00000123297
Ts translation elongation factor, mitochondrial
Low tissue specificity
Detected in all
TSGA10
ENSSSCG00000008186
ENSG00000135951
Testis specific 10
Tissue enhanced
Detected in all
testis:
54.0
TSHR
ENSSSCG00000031771
ENSG00000165409
Thyrotropin receptor precursor
Tissue enhanced
Detected in all
thyroid gland:
48.6
TSHZ1
ENSSSCG00000004861
ENSG00000179981
Teashirt zinc finger homeobox 1
Low tissue specificity
Detected in all
TSHZ3
ENSSSCG00000025214
ENSG00000121297
Teashirt zinc finger homeobox 3
Low tissue specificity
Detected in many
TSKU
ENSSSCG00000014871
ENSG00000182704
Tsukushi, small leucine rich proteoglycan
Tissue enhanced
Detected in many
kidney:
62.7
lens:
49.8
ovary:
81.7
TSN
ENSSSCG00000015729
ENSG00000211460
Translin
Tissue enhanced
Detected in all
lens:
51.4
TSNAX
ENSSSCG00000010171
TSNAX-DISC1 readthrough (NMD candidate)
Low tissue specificity
Detected in all
TSPAN10
ENSSSCG00000031531
ENSG00000182612
Tetraspanin 10
Tissue enriched
Detected in many
retina:
76.8
TSPAN12
ENSSSCG00000016620
ENSG00000106025
Tetraspanin-12
Tissue enhanced
Detected in all
heart:
63.7
TSPAN14
ENSSSCG00000010341
ENSG00000108219
Tetraspanin 14
Low tissue specificity
Detected in all
TSPAN15
ENSSSCG00000036152
ENSG00000099282
Tetraspanin 15
Tissue enhanced
Detected in many
lens:
89.8
TSPAN17
ENSSSCG00000014051
ENSG00000048140
Tetraspanin 17
Tissue enhanced
Detected in all
retina:
44.9
TSPAN19
ENSSSCG00000040399
ENSG00000231738
Tetraspanin 19
Tissue enhanced
Detected in all
upper respiratory system:
21.7
TSPAN3
ENSSSCG00000001868
ENSG00000140391
Tetraspanin-3
Low tissue specificity
Detected in all
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