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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
B4GALT2
ENSSSCG00000026793
ENSG00000117411
Beta-1,4-galactosyltransferase 2
Low tissue specificity
Detected in all
B4GALT5
ENSSSCG00000007465
ENSG00000158470
Beta-1,4-galactosyltransferase 5
Low tissue specificity
Detected in all
B4GALT7
ENSSSCG00000014035
ENSG00000027847
Beta-1,4-galactosyltransferase 7
Low tissue specificity
Detected in all
B4GAT1
ENSSSCG00000012940
ENSG00000174684
Beta-1,4-glucuronyltransferase 1
Tissue enhanced
Detected in many
brain:
41.1
B9D1
ENSSSCG00000039681
ENSG00000108641
B9 domain containing 1
Low tissue specificity
Detected in all
B9D2
ENSSSCG00000003013
ENSG00000123810
B9 domain containing 2
Low tissue specificity
Detected in all
BAALC
ENSSSCG00000006053
ENSG00000164929
Brain and acute leukemia cytoplasmic protein
Tissue enhanced
Detected in all
brain:
31.2
BABAM2
ENSSSCG00000026465
ENSG00000158019
BRISC and BRCA1 A complex member 2
Low tissue specificity
Detected in all
BACE1
ENSSSCG00000015079
ENSG00000186318
Beta-secretase 1 precursor
Low tissue specificity
Detected in all
BACH1
ENSSSCG00000012029
ENSG00000156273
BTB domain and CNC homolog 1
Low tissue specificity
Detected in all
BAD
ENSSSCG00000013033
ENSG00000002330
BCL2 associated agonist of cell death
Low tissue specificity
Detected in all
BAG1
ENSSSCG00000010996
ENSG00000107262
BAG family molecular chaperone regulator 1
Low tissue specificity
Detected in all
BAG2
ENSSSCG00000033526
ENSG00000112208
BCL2 associated athanogene 2
Tissue enhanced
Detected in all
smooth muscle:
67.5
BAG3
ENSSSCG00000010686
ENSG00000151929
BCL2 associated athanogene 3
Tissue enhanced
Detected in all
skeletal muscle:
118.3
BAG4
ENSSSCG00000034468
ENSG00000156735
BCL2 associated athanogene 4
Low tissue specificity
Detected in all
BAG5
ENSSSCG00000037197
ENSG00000166170
BCL2 associated athanogene 5
Group enriched
Detected in all
epididymis:
58.2
testis:
81.6
BAG6
ENSSSCG00000001410
ENSG00000204463
Large proline-rich protein BAG6
Tissue enriched
Detected in all
testis:
145.7
BAHCC1
ENSSSCG00000023045
ENSG00000266074
BAH domain and coiled-coil containing 1
Low tissue specificity
Detected in many
BAHD1
ENSSSCG00000004772
ENSG00000140320
Bromo adjacent homology domain containing 1
Low tissue specificity
Detected in all
BAIAP2
ENSSSCG00000017142
ENSG00000175866
BAI1 associated protein 2
Tissue enhanced
Detected in all
vagus nerve:
50.3
BAIAP2L1
ENSSSCG00000007602
ENSG00000006453
BAI1 associated protein 2 like 1
Tissue enhanced
Detected in many
large intestine:
36.2
stomach:
45.9
BAIAP3
ENSSSCG00000008029
ENSG00000007516
BAI1 associated protein 3
Tissue enhanced
Detected in many
brain:
36.9
pituitary gland:
26.1
BAK1
ENSSSCG00000001516
ENSG00000030110
BCL2 antagonist/killer 1
Tissue enhanced
Detected in all
stomach:
59.4
BAMBI
ENSSSCG00000011014
ENSG00000095739
BMP and activin membrane-bound inhibitor homolog precursor
Low tissue specificity
Detected in all
BANP
ENSSSCG00000020678
ENSG00000172530
Protein BANP
Low tissue specificity
Detected in all
BAP1
ENSSSCG00000011438
ENSG00000163930
BRCA1 associated protein 1
Low tissue specificity
Detected in all
BARD1
ENSSSCG00000016170
ENSG00000138376
BRCA1 associated RING domain 1
Tissue enhanced
Detected in all
lymphoid tissue:
21.2
BARHL2
ENSSSCG00000006914
ENSG00000143032
BarH like homeobox 2
Tissue enriched
Detected in some
brain:
33.7
BARX2
ENSSSCG00000036157
ENSG00000043039
BARX homeobox 2
Tissue enhanced
Detected in many
male glands:
31.0
mouth:
27.1
skin:
19.3
BATF3
ENSSSCG00000026587
ENSG00000123685
Basic leucine zipper ATF-like transcription factor 3
Tissue enhanced
Detected in many
cornea:
11.7
BAX
ENSSSCG00000003144
ENSG00000087088
BCL2 associated X, apoptosis regulator
Low tissue specificity
Detected in all
BAZ1A
ENSSSCG00000001958
ENSG00000198604
Bromodomain adjacent to zinc finger domain protein 1A
Low tissue specificity
Detected in many
BAZ1B
ENSSSCG00000027342
ENSG00000009954
Bromodomain adjacent to zinc finger domain 1B
Low tissue specificity
Detected in all
BAZ2A
ENSSSCG00000000403
ENSG00000076108
Bromodomain adjacent to zinc finger domain 2A
Low tissue specificity
Detected in all
BAZ2B
ENSSSCG00000015882
ENSG00000123636
Bromodomain adjacent to zinc finger domain 2B
Low tissue specificity
Detected in all
BBOX1
ENSSSCG00000013337
ENSG00000129151
Gamma-butyrobetaine hydroxylase 1
Tissue enhanced
Detected in some
brain:
16.3
kidney:
49.8
liver:
20.6
BBS10
ENSSSCG00000000523
ENSG00000179941
Bardet-Biedl syndrome 10
Low tissue specificity
Detected in all
BBS12
ENSSSCG00000026290
ENSG00000181004
Bardet-Biedl syndrome 12
Low tissue specificity
Detected in all
BBS2
ENSSSCG00000025417
ENSG00000125124
Bardet-Biedl syndrome 2
Low tissue specificity
Detected in all
BBS4
ENSSSCG00000001924
ENSG00000140463
Bardet-Biedl syndrome 4 protein
Low tissue specificity
Detected in all
BBS5
ENSSSCG00000015931
ENSG00000163093
Bardet-Biedl syndrome 5
Low tissue specificity
Detected in many
BBS7
ENSSSCG00000009093
ENSG00000138686
Bardet-Biedl syndrome 7
Low tissue specificity
Detected in all
BBS9
ENSSSCG00000024754
ENSG00000122507
Bardet-Biedl syndrome 9
Tissue enhanced
Detected in all
fallopian tube:
47.6
BBX
ENSSSCG00000011943
ENSG00000114439
BBX, HMG-box containing
Low tissue specificity
Detected in all
BCAM
ENSSSCG00000020657
ENSG00000187244
Basal cell adhesion molecule (Lutheran blood group)
Tissue enhanced
Detected in all
adipose tissue:
141.6
aorta:
88.3
BCAP29
ENSSSCG00000022869
ENSG00000075790
B cell receptor associated protein 29
Tissue enhanced
Detected in all
testis:
90.1
BCAP31
ENSSSCG00000012772
ENSG00000185825
B cell receptor associated protein 31
Low tissue specificity
Detected in all
BCAR1
ENSSSCG00000028878
ENSG00000050820
BCAR1, Cas family scaffolding protein
Tissue enhanced
Detected in all
kidney:
80.1
BCAR3
ENSSSCG00000006893
ENSG00000137936
BCAR3, NSP family adaptor protein
Low tissue specificity
Detected in all
BCAS1
ENSSSCG00000007485
ENSG00000064787
Breast carcinoma-amplified sequence 1
Group enriched
Detected in many
brain:
128.6
stomach:
34.9
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