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UMAP gene cluster
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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15222 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A2M
ENSSSCG00000000660
ENSG00000175899
Alpha-2-macroglobulin
Tissue enhanced
Detected in many
adrenal gland:
238.9
liver:
109.4
testis:
79.2
A4GALT
ENSSSCG00000026962
ENSG00000128274
Alpha 1,4-galactosyltransferase (P blood group)
Low tissue specificity
Detected in many
AAAS
ENSSSCG00000000268
ENSG00000094914
Aladin WD repeat nucleoporin
Low tissue specificity
Detected in all
AACS
ENSSSCG00000009755
ENSG00000081760
Acetoacetyl-CoA synthetase
Tissue enhanced
Detected in all
adipose tissue:
40.7
AADACL2
ENSSSCG00000033781
ENSG00000197953
Arylacetamide deacetylase like 2
Group enriched
Detected in some
cartilage:
3.8
mouth:
11.8
skin:
8.1
testis:
4.2
upper respiratory system:
3.3
AADAT
ENSSSCG00000009708
ENSG00000109576
Aminoadipate aminotransferase
Tissue enriched
Detected in all
kidney:
137.5
AAED1
ENSSSCG00000011169
ENSG00000158122
AhpC/TSA antioxidant enzyme domain containing 1
Low tissue specificity
Detected in all
AAGAB
ENSSSCG00000004951
ENSG00000103591
Alpha and gamma adaptin binding protein
Low tissue specificity
Detected in all
AAK1
ENSSSCG00000008337
ENSG00000115977
AP2-associated protein kinase 1
Low tissue specificity
Detected in all
AAMP
ENSSSCG00000016189
ENSG00000127837
Angio associated migratory cell protein
Low tissue specificity
Detected in all
AAR2
ENSSSCG00000007315
ENSG00000131043
AAR2 splicing factor homolog
Low tissue specificity
Detected in all
AARS2
ENSSSCG00000001706
ENSG00000124608
Alanyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
AARSD1
ENSSSCG00000037979
ENSG00000266967
Alanyl-tRNA synthetase domain containing 1
Low tissue specificity
Detected in all
AASDH
ENSSSCG00000027403
ENSG00000157426
Aminoadipate-semialdehyde dehydrogenase
Low tissue specificity
Detected in all
AASDHPPT
ENSSSCG00000014998
ENSG00000149313
Aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
Low tissue specificity
Detected in all
AASS
ENSSSCG00000016613
ENSG00000008311
Alpha-aminoadipic semialdehyde synthase, mitochondrial
Tissue enhanced
Detected in all
heart:
27.8
liver:
58.3
AATF
ENSSSCG00000017693
ENSG00000275700
Apoptosis antagonizing transcription factor
Low tissue specificity
Detected in all
ABCA1
ENSSSCG00000005423
ENSG00000165029
ATP-binding cassette sub-family A member 1
Low tissue specificity
Detected in all
ABCA13
ENSSSCG00000031141
ENSG00000179869
ATP binding cassette subfamily A member 13
Tissue enriched
Detected in many
upper respiratory system:
42.6
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ABCA5
ENSSSCG00000017255
ENSG00000154265
ATP binding cassette subfamily A member 5
Tissue enhanced
Detected in all
epididymis:
39.2
ABCA6
ENSSSCG00000017256
ENSG00000154262
ATP binding cassette subfamily A member 6
Tissue enhanced
Detected in many
liver:
74.8
ABCA7
ENSSSCG00000023121
ENSG00000064687
ATP binding cassette subfamily A member 7
Tissue enhanced
Detected in many
lymphoid tissue:
29.4
ABCA8
ENSSSCG00000026473
ENSG00000141338
ATP binding cassette subfamily A member 8
Tissue enhanced
Detected in many
liver:
61.6
vagus nerve:
33.1
ABCA9
ENSSSCG00000017257
ENSG00000154258
ATP binding cassette subfamily A member 9
Tissue enhanced
Detected in many
vagus nerve:
43.9
ABCB10
ENSSSCG00000010188
ENSG00000135776
ATP binding cassette subfamily B member 10
Low tissue specificity
Detected in all
ABCB6
ENSSSCG00000016210
ENSG00000115657
ATP binding cassette subfamily B member 6 (Langereis blood group)
Tissue enhanced
Detected in all
large intestine:
37.4
ABCB7
ENSSSCG00000012424
ENSG00000131269
ATP binding cassette subfamily B member 7
Low tissue specificity
Detected in all
ABCB8
ENSSSCG00000027986
ENSG00000197150
ATP binding cassette subfamily B member 8
Low tissue specificity
Detected in all
ABCB9
ENSSSCG00000009784
ENSG00000150967
ATP binding cassette subfamily B member 9
Tissue enhanced
Detected in many
brain:
15.6
ABCC10
ENSSSCG00000001680
ENSG00000124574
ATP binding cassette subfamily C member 10
Low tissue specificity
Detected in all
ABCC5
ENSSSCG00000011782
ENSG00000114770
ATP binding cassette subfamily C member 5
Tissue enhanced
Detected in all
lymphoid tissue:
75.2
ABCD1
ENSSSCG00000012779
ENSG00000101986
ATP binding cassette subfamily D member 1
Low tissue specificity
Detected in all
ABCD2
ENSSSCG00000000781
ENSG00000173208
ATP binding cassette subfamily D member 2
Tissue enhanced
Detected in all
pineal gland:
15.2
ABCD3
ENSSSCG00000028620
ENSG00000117528
ATP-binding cassette sub-family D member 3
Low tissue specificity
Detected in all
ABCD4
ENSSSCG00000038231
ENSG00000119688
ATP binding cassette subfamily D member 4
Low tissue specificity
Detected in all
ABCE1
ENSSSCG00000009043
ENSG00000164163
ATP binding cassette subfamily E member 1
Low tissue specificity
Detected in all
ABCF1
ENSSSCG00000001346
ENSG00000204574
ATP-binding cassette sub-family F member 1
Low tissue specificity
Detected in all
ABCF3
ENSSSCG00000028856
ENSG00000161204
ATP binding cassette subfamily F member 3
Low tissue specificity
Detected in all
ABCG1
ENSSSCG00000027745
ENSG00000160179
ATP binding cassette subfamily G member 1
Low tissue specificity
Detected in many
ABCG2
ENSSSCG00000009215
ENSG00000118777
ATP-binding cassette sub-family G member 2
Low tissue specificity
Detected in all
ABCG8
ENSSSCG00000008453
ENSG00000143921
ATP binding cassette subfamily G member 8
Low tissue specificity
Detected in all
ABHD1
ENSSSCG00000008554
ENSG00000143994
Abhydrolase domain containing 1
Low tissue specificity
Detected in all
ABHD10
ENSSSCG00000034450
ENSG00000144827
Abhydrolase domain containing 10
Tissue enhanced
Detected in all
adrenal gland:
36.2
ABHD11
ENSSSCG00000007715
ENSG00000106077
Abhydrolase domain containing 11
Low tissue specificity
Detected in all
ABHD12
ENSSSCG00000040449
ENSG00000100997
Abhydrolase domain containing 12
Tissue enhanced
Detected in all
epididymis:
34.9
lens:
116.2
ABHD12B
ENSSSCG00000005023
ENSG00000131969
Abhydrolase domain containing 12B
Low tissue specificity
Detected in all
ABHD13
ENSSSCG00000009541
ENSG00000139826
Abhydrolase domain containing 13
Low tissue specificity
Detected in all
ABHD14A
ENSSSCG00000030229
ENSG00000248487
Protein ABHD14A precursor
Low tissue specificity
Detected in all
ABHD14B
ENSSSCG00000040890
ENSG00000114779
Abhydrolase domain containing 14B
Low tissue specificity
Detected in all
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