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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CREM
ENSSSCG00000011106
ENSG00000095794
CAMP responsive element modulator
Tissue enriched
Detected in all
testis:
83.2
CRHBP
ENSSSCG00000014093
ENSG00000145708
Corticotropin-releasing factor-binding protein precursor
Tissue enriched
Detected in all
brain:
22.3
CRHR2
ENSSSCG00000033514
ENSG00000106113
Corticotropin-releasing factor receptor 2
Low tissue specificity
Detected in all
CRIM1
ENSSSCG00000008504
ENSG00000150938
Cysteine rich transmembrane BMP regulator 1
Tissue enhanced
Detected in all
cartilage:
107.8
lens:
90.0
CRIP2
ENSSSCG00000038713
ENSG00000182809
Cysteine rich protein 2
Tissue enhanced
Detected in all
heart:
157.2
CRIPT
ENSSSCG00000039935
ENSG00000119878
CXXC repeat containing interactor of PDZ3 domain
Low tissue specificity
Detected in all
CRISP1
ENSSSCG00000001739
ENSG00000124812
Cysteine-rich secretory protein 1 precursor
Group enriched
Detected in all
ductus deferens:
38.4
epididymis:
73.0
CRISPLD1
ENSSSCG00000006171
ENSG00000121005
Cysteine rich secretory protein LCCL domain containing 1
Group enriched
Detected in many
cartilage:
26.9
cornea:
12.9
dura mater:
44.0
CRK
ENSSSCG00000033812
ENSG00000167193
Adapter molecule crk
Low tissue specificity
Detected in all
CRKL
ENSSSCG00000010095
ENSG00000099942
CRK like proto-oncogene, adaptor protein
Low tissue specificity
Detected in all
CRLF3
ENSSSCG00000017743
ENSG00000176390
Cytokine receptor-like factor 3
Tissue enhanced
Detected in all
lymphoid tissue:
57.9
CRLS1
ENSSSCG00000040202
ENSG00000088766
Cardiolipin synthase 1
Low tissue specificity
Detected in all
CRNKL1
ENSSSCG00000038587
ENSG00000101343
Crooked neck pre-mRNA splicing factor 1
Low tissue specificity
Detected in all
CRNN
ENSSSCG00000006604
ENSG00000143536
Cornulin
Tissue enriched
Detected in all
mouth:
102.2
CROCC2
ENSSSCG00000036261
ENSG00000226321
Ciliary rootlet coiled-coil, rootletin family member 2
Tissue enhanced
Detected in many
adipose tissue:
27.6
fallopian tube:
21.7
lung:
13.6
upper respiratory system:
16.7
CROT
ENSSSCG00000015391
ENSG00000005469
Peroxisomal carnitine O-octanoyltransferase
Tissue enriched
Detected in all
liver:
89.6
CRP
ENSSSCG00000006403
ENSG00000132693
C-reactive protein precursor
Tissue enhanced
Detected in all
liver:
48.4
CRTAM
ENSSSCG00000015137
ENSG00000109943
Cytotoxic and regulatory T cell molecule
Tissue enhanced
Detected in all
brain:
25.1
CRTAP
ENSSSCG00000039054
ENSG00000170275
Cartilage associated protein
Low tissue specificity
Detected in all
CRTC1
ENSSSCG00000013915
ENSG00000105662
CREB regulated transcription coactivator 1
Tissue enhanced
Detected in all
brain:
50.3
CRTC2
ENSSSCG00000006567
ENSG00000160741
CREB regulated transcription coactivator 2
Low tissue specificity
Detected in all
CRTC3
ENSSSCG00000034090
ENSG00000140577
CREB regulated transcription coactivator 3
Low tissue specificity
Detected in all
CRY1
ENSSSCG00000000164
ENSG00000008405
Cryptochrome circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
44.8
CRY2
ENSSSCG00000013270
ENSG00000121671
Cryptochrome circadian regulator 2
Low tissue specificity
Detected in all
CRYAB
ENSSSCG00000036724
ENSG00000109846
Alpha-crystallin B chain
Tissue enriched
Detected in many
lens:
2223.0
CRYBG1
ENSSSCG00000004371
ENSG00000112297
Crystallin beta-gamma domain containing 1
Tissue enhanced
Detected in many
cornea:
55.1
mouth:
35.3
CRYBG3
ENSSSCG00000022895
ENSG00000080200
Crystallin beta-gamma domain containing 3
Tissue enhanced
Detected in many
heart:
77.6
CRYL1
ENSSSCG00000009268
ENSG00000165475
Lambda-crystallin homolog
Tissue enhanced
Detected in all
kidney:
135.2
CRYZ
ENSSSCG00000003780
ENSG00000116791
Quinone oxidoreductase
Tissue enriched
Detected in all
lens:
275.6
CRYZL1
ENSSSCG00000028377
ENSG00000205758
Quinone oxidoreductase-like protein 1
Low tissue specificity
Detected in all
CSAD
ENSSSCG00000000259
ENSG00000139631
Cysteine sulfinic acid decarboxylase
Tissue enhanced
Detected in all
adipose tissue:
59.2
CSDC2
ENSSSCG00000000062
ENSG00000172346
Cold shock domain-containing protein C2
Tissue enhanced
Detected in many
adrenal gland:
67.1
brain:
58.4
ovary:
44.5
CSDE1
ENSSSCG00000006752
ENSG00000009307
Cold shock domain containing E1
Low tissue specificity
Detected in all
CSE1L
ENSSSCG00000025534
ENSG00000124207
Exportin-2
Low tissue specificity
Detected in all
CSF1
ENSSSCG00000037449
ENSG00000184371
Macrophage colony-stimulating factor 1 precursor
Tissue enhanced
Detected in many
synovial tissue:
59.3
CSF1R
ENSSSCG00000014441
ENSG00000182578
Colony stimulating factor 1 receptor
Tissue enhanced
Detected in many
lymphoid tissue:
74.4
synovial tissue:
55.6
CSF2
ENSSSCG00000023737
ENSG00000164400
Granulocyte-macrophage colony-stimulating factor precursor
Tissue enhanced
Detected in many
lung:
9.1
CSF2RB
ENSSSCG00000000136
ENSG00000100368
Colony stimulating factor 2 receptor beta common subunit
Tissue enhanced
Detected in many
lymphoid tissue:
25.3
CSF3R
ENSSSCG00000025795
ENSG00000119535
Colony stimulating factor 3 receptor
Tissue enhanced
Detected in many
dura mater:
20.7
lung:
17.6
lymphoid tissue:
21.1
CSGALNACT1
ENSSSCG00000007005
ENSG00000147408
Chondroitin sulfate N-acetylgalactosaminyltransferase 1
Tissue enhanced
Detected in many
cartilage:
57.9
CSGALNACT2
ENSSSCG00000010200
ENSG00000169826
Chondroitin sulfate N-acetylgalactosaminyltransferase 2
Low tissue specificity
Detected in all
CSK
ENSSSCG00000001900
ENSG00000103653
C-src tyrosine kinase
Tissue enhanced
Detected in all
lymphoid tissue:
63.2
CSKMT
ENSSSCG00000027847
ENSG00000214756
Citrate synthase lysine methyltransferase
Low tissue specificity
Detected in many
CSNK1A1
ENSSSCG00000014435
ENSG00000113712
Casein kinase 1 alpha 1
Low tissue specificity
Detected in all
CSNK1D
ENSSSCG00000035852
ENSG00000141551
Casein kinase 1 delta
Low tissue specificity
Detected in all
CSNK1G1
ENSSSCG00000004558
ENSG00000169118
Casein kinase 1 gamma 1
Low tissue specificity
Detected in all
CSNK1G2
ENSSSCG00000013445
ENSG00000133275
Casein kinase 1 gamma 2
Tissue enhanced
Detected in all
testis:
86.9
CSNK1G3
ENSSSCG00000014240
ENSG00000151292
Casein kinase 1 gamma 3
Low tissue specificity
Detected in all
CSNK2A2
ENSSSCG00000002804
ENSG00000070770
Casein kinase 2 alpha 2
Low tissue specificity
Detected in all
CSPG5
ENSSSCG00000039224
ENSG00000114646
Chondroitin sulfate proteoglycan 5
Tissue enhanced
Detected in all
brain:
32.3
thyroid gland:
18.5
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