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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POLR2C
ENSSSCG00000025454
ENSG00000102978
RNA polymerase II subunit C
Low tissue specificity
Detected in all
POLR2D
ENSSSCG00000039230
ENSG00000144231
RNA polymerase II subunit D
Low tissue specificity
Detected in all
POLR2E
ENSSSCG00000021472
ENSG00000099817
RNA polymerase II subunit E
Low tissue specificity
Detected in all
POLR2F
ENSSSCG00000000116
ENSG00000100142
RNA polymerase II subunit F
Low tissue specificity
Detected in all
POLR2G
ENSSSCG00000025571
ENSG00000168002
RNA polymerase II subunit G
Low tissue specificity
Detected in all
POLR2H
ENSSSCG00000022507
ENSG00000163882
DNA-directed RNA polymerases I, II, and III subunit RPABC3
Low tissue specificity
Detected in all
POLR2I
ENSSSCG00000039196
ENSG00000105258
DNA-directed RNA polymerase II subunit RPB9
Low tissue specificity
Detected in all
POLR2J
ENSSSCG00000007688
ENSG00000005075
RNA polymerase II subunit J
Low tissue specificity
Detected in all
POLR2K
ENSSSCG00000021180
ENSG00000147669
RNA polymerase II subunit K
Low tissue specificity
Detected in all
POLR3A
ENSSSCG00000010327
ENSG00000148606
RNA polymerase III subunit A
Low tissue specificity
Detected in all
POLR3B
ENSSSCG00000000169
ENSG00000013503
RNA polymerase III subunit B
Tissue enhanced
Detected in all
testis:
60.2
POLR3C
ENSSSCG00000006691
ENSG00000186141
RNA polymerase III subunit C
Low tissue specificity
Detected in all
POLR3D
ENSSSCG00000009622
ENSG00000168495
RNA polymerase III subunit D
Low tissue specificity
Detected in all
POLR3E
ENSSSCG00000007840
ENSG00000058600
RNA polymerase III subunit E
Low tissue specificity
Detected in all
POLR3F
ENSSSCG00000007095
ENSG00000132664
RNA polymerase III subunit F
Low tissue specificity
Detected in all
POLR3G
ENSSSCG00000026233
ENSG00000113356
RNA polymerase III subunit G
Low tissue specificity
Detected in all
POLR3H
ENSSSCG00000000063
ENSG00000100413
RNA polymerase III subunit H
Low tissue specificity
Detected in all
POLRMT
ENSSSCG00000035693
ENSG00000099821
RNA polymerase mitochondrial
Low tissue specificity
Detected in all
POMGNT1
ENSSSCG00000029145
ENSG00000085998
Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Low tissue specificity
Detected in all
POMGNT2
ENSSSCG00000011293
ENSG00000144647
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Tissue enhanced
Detected in all
ovary:
36.1
POMK
ENSSSCG00000031510
ENSG00000185900
Protein-O-mannose kinase
Low tissue specificity
Detected in all
POMP
ENSSSCG00000037170
ENSG00000132963
Proteasome maturation protein
Tissue enhanced
Detected in all
lens:
78.2
POMT1
ENSSSCG00000005716
ENSG00000130714
Protein O-mannosyltransferase 1
Tissue enhanced
Detected in all
testis:
58.6
POMT2
ENSSSCG00000002397
ENSG00000009830
Protein O-mannosyltransferase 2
Low tissue specificity
Detected in all
PON2
ENSSSCG00000015331
ENSG00000105854
Serum paraoxonase/arylesterase 2 precursor
Tissue enhanced
Detected in many
lens:
39.3
POP1
ENSSSCG00000006078
ENSG00000104356
POP1 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP4
ENSSSCG00000002854
ENSG00000105171
POP4 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP5
ENSSSCG00000009912
ENSG00000167272
POP5 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POP7
ENSSSCG00000007672
ENSG00000172336
POP7 homolog, ribonuclease P/MRP subunit
Low tissue specificity
Detected in all
POPDC3
ENSSSCG00000004367
ENSG00000132429
Popeye domain-containing protein 3
Tissue enhanced
Detected in all
heart:
22.6
skeletal muscle:
39.2
POR
ENSSSCG00000038320
ENSG00000127948
NADPH--cytochrome P450 reductase
Low tissue specificity
Detected in all
PORCN
ENSSSCG00000024793
ENSG00000102312
Porcupine O-acyltransferase
Low tissue specificity
Detected in all
POU1F1
ENSSSCG00000011996
ENSG00000064835
Pituitary-specific positive transcription factor 1
Tissue enriched
Detected in many
pituitary gland:
76.5
POU2F1
ENSSSCG00000006310
ENSG00000143190
POU domain, class 2, transcription factor 1
Low tissue specificity
Detected in all
POU2F3
ENSSSCG00000028237
ENSG00000137709
POU class 2 homeobox 3
Group enriched
Detected in some
breast:
35.7
skin:
88.7
POU5F2
ENSSSCG00000036467
ENSG00000248483
POU domain class 5, transcription factor 2
Low tissue specificity
Detected in all
PP2D1
ENSSSCG00000027327
ENSG00000183977
Protein phosphatase 2C like domain containing 1
Tissue enriched
Detected in all
testis:
46.1
PPA1
ENSSSCG00000010261
ENSG00000180817
Pyrophosphatase (inorganic) 1
Tissue enhanced
Detected in many
brain:
55.9
pineal gland:
64.9
PPA2
ENSSSCG00000022788
ENSG00000138777
Pyrophosphatase (inorganic) 2
Low tissue specificity
Detected in all
PPAN
ENSSSCG00000013662
ENSG00000130810
Suppressor of SWI4 1 homolog
Low tissue specificity
Detected in all
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPARD
ENSSSCG00000001539
ENSG00000112033
Peroxisome proliferator-activated receptor delta
Tissue enhanced
Detected in all
stomach:
76.6
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PPAT
ENSSSCG00000008902
ENSG00000128059
Phosphoribosyl pyrophosphate amidotransferase
Low tissue specificity
Detected in all
PPBP
ENSSSCG00000037579
ENSG00000163736
Platelet basic protein
Low tissue specificity
Detected in all
PPCDC
ENSSSCG00000027478
ENSG00000138621
Phosphopantothenoylcysteine decarboxylase
Low tissue specificity
Detected in all
PPEF1
ENSSSCG00000030274
ENSG00000086717
Protein phosphatase with EF-hand domain 1
Group enriched
Detected in many
brain:
37.4
testis:
15.5
PPFIA1
ENSSSCG00000037451
ENSG00000131626
PTPRF interacting protein alpha 1
Low tissue specificity
Detected in all
PPFIA3
ENSSSCG00000022324
ENSG00000177380
PTPRF interacting protein alpha 3
Tissue enhanced
Detected in all
brain:
23.8
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