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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PIP4P2
ENSSSCG00000006121
ENSG00000155099
Phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Tissue enhanced
Detected in many
brain:
16.8
PIP5K1A
ENSSSCG00000030547
ENSG00000143398
Phosphatidylinositol 4-phosphate 5-kinase type-1 alpha
Low tissue specificity
Detected in all
PIP5K1B
ENSSSCG00000027161
ENSG00000107242
Phosphatidylinositol-4-phosphate 5-kinase type 1 beta
Tissue enhanced
Detected in many
choroid plexus:
94.9
PIP5K1C
ENSSSCG00000013490
ENSG00000186111
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma
Tissue enhanced
Detected in all
brain:
50.9
PIP5KL1
ENSSSCG00000005629
ENSG00000167103
Phosphatidylinositol-4-phosphate 5-kinase like 1
Tissue enhanced
Detected in many
brain:
6.7
cartilage:
7.9
PIPOX
ENSSSCG00000017781
ENSG00000179761
Pipecolic acid and sarcosine oxidase
Tissue enhanced
Detected in many
kidney:
38.4
liver:
34.0
retina:
17.6
PIR
ENSSSCG00000012136
ENSG00000087842
Pirin
Tissue enhanced
Detected in all
lens:
47.8
PISD
ENSSSCG00000010032
ENSG00000241878
Phosphatidylserine decarboxylase proenzyme, mitochondrial
Tissue enhanced
Detected in all
epididymis:
86.6
PITHD1
ENSSSCG00000023495
ENSG00000057757
PITH domain containing 1
Tissue enhanced
Detected in all
lens:
61.1
PITPNA
ENSSSCG00000025248
ENSG00000174238
Phosphatidylinositol transfer protein alpha
Low tissue specificity
Detected in all
PITPNC1
ENSSSCG00000017274
ENSG00000154217
Cytoplasmic phosphatidylinositol transfer protein 1
Tissue enhanced
Detected in all
lymphoid tissue:
103.0
PITPNM1
ENSSSCG00000012903
ENSG00000110697
Phosphatidylinositol transfer protein membrane associated 1
Low tissue specificity
Detected in all
PITPNM2
ENSSSCG00000009781
ENSG00000090975
Phosphatidylinositol transfer protein membrane associated 2
Low tissue specificity
Detected in all
PITRM1
ENSSSCG00000011157
ENSG00000107959
Pitrilysin metallopeptidase 1
Low tissue specificity
Detected in all
PIWIL2
ENSSSCG00000030228
ENSG00000197181
Piwi-like protein 2
Group enriched
Detected in some
choroid plexus:
9.2
testis:
35.7
PIWIL4
ENSSSCG00000014959
ENSG00000134627
Piwi-like protein 4
Low tissue specificity
Detected in all
PJA1
ENSSSCG00000024463
ENSG00000181191
Praja ring finger ubiquitin ligase 1
Tissue enhanced
Detected in all
epididymis:
78.8
PJA2
ENSSSCG00000022845
ENSG00000198961
Praja ring finger ubiquitin ligase 2
Tissue enhanced
Detected in all
brain:
57.1
PJVK
ENSSSCG00000015998
ENSG00000204311
Pejvakin
Tissue enhanced
Detected in many
choroid plexus:
12.7
PKD1
ENSSSCG00000008041
ENSG00000008710
Polycystin-1 precursor
Tissue enhanced
Detected in all
cartilage:
58.6
PKD2
ENSSSCG00000009217
ENSG00000118762
Polycystin-2
Low tissue specificity
Detected in all
PKD2L2
ENSSSCG00000026421
ENSG00000078795
Polycystin 2 like 2, transient receptor potential cation channel
Tissue enriched
Detected in some
testis:
92.6
PKDCC
ENSSSCG00000008468
ENSG00000162878
Protein kinase domain containing, cytoplasmic
Low tissue specificity
Detected in all
PKHD1L1
ENSSSCG00000006025
ENSG00000205038
PKHD1 like 1
Tissue enhanced
Detected in many
adipose tissue:
16.8
fallopian tube:
30.0
mesothelial tissue:
57.5
PKIB
ENSSSCG00000004236
ENSG00000135549
CAMP-dependent protein kinase inhibitor beta
Tissue enhanced
Detected in many
brain:
30.0
cornea:
40.2
male glands:
32.0
stomach:
35.0
PKIG
ENSSSCG00000022998
ENSG00000168734
CAMP-dependent protein kinase inhibitor gamma
Low tissue specificity
Detected in all
PKLR
ENSSSCG00000026149
ENSG00000143627
Pyruvate kinase L/R
Tissue enriched
Detected in some
liver:
53.5
PKM
ENSSSCG00000001930
ENSG00000067225
Pyruvate kinase M1/2
Tissue enhanced
Detected in all
skeletal muscle:
301.5
PKMYT1
ENSSSCG00000029264
ENSG00000127564
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
Tissue enriched
Detected in all
testis:
41.6
PKN1
ENSSSCG00000013779
ENSG00000123143
Protein kinase N1
Low tissue specificity
Detected in all
PKN2
ENSSSCG00000006927
ENSG00000065243
Protein kinase N2
Low tissue specificity
Detected in all
PKN3
ENSSSCG00000005657
ENSG00000160447
Protein kinase N3
Tissue enhanced
Detected in many
cartilage:
67.6
PKNOX1
ENSSSCG00000037663
ENSG00000160199
PBX/knotted 1 homeobox 1
Low tissue specificity
Detected in all
PKNOX2
ENSSSCG00000015211
ENSG00000165495
PBX/knotted 1 homeobox 2
Low tissue specificity
Detected in all
PKP2
ENSSSCG00000000528
ENSG00000057294
Plakophilin 2
Tissue enhanced
Detected in all
heart:
57.1
PKP4
ENSSSCG00000015878
ENSG00000144283
Plakophilin 4
Tissue enhanced
Detected in all
brain:
97.4
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLA2G10
ENSSSCG00000040569
ENSG00000069764
Phospholipase A2 group X
Low tissue specificity
Detected in all
PLA2G12A
ENSSSCG00000009139
ENSG00000123739
Phospholipase A2 group XIIA
Low tissue specificity
Detected in all
PLA2G16
ENSSSCG00000026914
ENSG00000176485
HRAS-like suppressor 3
Tissue enhanced
Detected in all
lens:
127.2
PLA2G1B
ENSSSCG00000029501
ENSG00000170890
Phospholipase A2, major isoenzyme precursor
Low tissue specificity
Detected in all
PLA2G3
ENSSSCG00000010023
ENSG00000100078
Phospholipase A2 group III
Tissue enhanced
Detected in many
ovary:
26.8
skin:
27.0
PLA2G4A
ENSSSCG00000023351
ENSG00000116711
Phospholipase A2 group IVA
Low tissue specificity
Detected in many
PLA2G4B
ENSSSCG00000004737
ENSG00000168970,ENSG00000243708
Cytosolic phospholipase A2 beta
Low tissue specificity
Detected in all
PLA2G5
ENSSSCG00000034429
ENSG00000127472
Phospholipase A2 group V
Low tissue specificity
Detected in all
PLA2G6
ENSSSCG00000000110
ENSG00000184381
Phospholipase A2 group VI
Low tissue specificity
Detected in all
PLA2G7
ENSSSCG00000001723
ENSG00000146070
Platelet-activating factor acetylhydrolase isoform 1 precursor
Tissue enhanced
Detected in all
lens:
62.1
PLA2R1
ENSSSCG00000015885
ENSG00000153246
Phospholipase A2 receptor 1
Tissue enhanced
Detected in many
brain:
67.1
epididymis:
32.4
retina:
25.7
PLAA
ENSSSCG00000005126
ENSG00000137055
Phospholipase A2 activating protein
Low tissue specificity
Detected in all
PLAC8
ENSSSCG00000009240
ENSG00000145287
Placenta specific 8
Group enriched
Detected in many
adipose tissue:
33.1
lymphoid tissue:
51.6
mesothelial tissue:
49.4
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