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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PHC3
ENSSSCG00000030467
ENSG00000173889
Polyhomeotic homolog 3
Low tissue specificity
Detected in all
PHF1
ENSSSCG00000001511
ENSG00000112511
PHD finger protein 1
Low tissue specificity
Detected in all
PHF10
ENSSSCG00000030155
ENSG00000130024
PHD finger protein 10
Low tissue specificity
Detected in all
PHF11
ENSSSCG00000009396
ENSG00000136147
PHD finger protein 11
Low tissue specificity
Detected in all
PHF12
ENSSSCG00000017779
ENSG00000109118
PHD finger protein 12
Low tissue specificity
Detected in all
PHF13
ENSSSCG00000027869
ENSG00000116273
PHD finger protein 13
Low tissue specificity
Detected in all
PHF14
ENSSSCG00000026722
ENSG00000106443
PHD finger protein 14
Low tissue specificity
Detected in all
PHF19
ENSSSCG00000005510
ENSG00000119403
PHD finger protein 19
Tissue enhanced
Detected in all
cartilage:
53.7
PHF2
ENSSSCG00000008080
ENSG00000197724
PHD finger protein 2
Low tissue specificity
Detected in all
PHF20
ENSSSCG00000007311
ENSG00000025293
PHD finger protein 20
Low tissue specificity
Detected in all
PHF20L1
ENSSSCG00000005950
ENSG00000129292
PHD finger protein 20 like 1
Low tissue specificity
Detected in all
PHF21A
ENSSSCG00000023974
ENSG00000135365
PHD finger protein 21A
Tissue enhanced
Detected in all
lens:
102.4
PHF21B
ENSSSCG00000000020
ENSG00000056487
PHD finger protein 21B
Low tissue specificity
Detected in many
PHF23
ENSSSCG00000017937
ENSG00000040633
PHD finger protein 23
Low tissue specificity
Detected in all
PHF3
ENSSSCG00000035259
ENSG00000118482
PHD finger protein 3
Low tissue specificity
Detected in all
PHF5A
ENSSSCG00000035082
ENSG00000100410
PHD finger protein 5A
Low tissue specificity
Detected in all
PHF6
ENSSSCG00000022942
ENSG00000156531
PHD finger protein 6
Low tissue specificity
Detected in all
PHF8
ENSSSCG00000012329
ENSG00000172943
PHD finger protein 8
Low tissue specificity
Detected in all
PHGDH
ENSSSCG00000006717
ENSG00000092621
D-3-phosphoglycerate dehydrogenase
Tissue enhanced
Detected in many
brain:
44.1
endometrium:
80.4
PHIP
ENSSSCG00000004473
ENSG00000146247
Pleckstrin homology domain interacting protein
Low tissue specificity
Detected in all
PHKA1
ENSSSCG00000012411
ENSG00000067177
Phosphorylase kinase regulatory subunit alpha 1
Tissue enriched
Detected in all
skeletal muscle:
92.2
PHKA2
ENSSSCG00000012157
ENSG00000044446
Phosphorylase kinase regulatory subunit alpha 2
Tissue enhanced
Detected in all
liver:
29.9
PHKG1
ENSSSCG00000007744
ENSG00000164776
Phosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform
Tissue enhanced
Detected in all
skeletal muscle:
38.8
PHKG2
ENSSSCG00000007788
ENSG00000156873
Phosphorylase b kinase gamma catalytic chain, liver/testis isoform
Tissue enriched
Detected in all
testis:
113.5
PHLDA1
ENSSSCG00000000521
ENSG00000139289
Pleckstrin homology like domain family A member 1
Tissue enhanced
Detected in all
cartilage:
197.4
salivary gland:
118.9
PHLDA3
ENSSSCG00000029359
ENSG00000174307
Pleckstrin homology like domain family A member 3
Low tissue specificity
Detected in many
PHLDB1
ENSSSCG00000024578
ENSG00000019144
Pleckstrin homology like domain family B member 1
Tissue enhanced
Detected in all
cartilage:
87.1
PHLDB2
ENSSSCG00000022081
ENSG00000144824
Pleckstrin homology like domain family B member 2
Low tissue specificity
Detected in many
PHLDB3
ENSSSCG00000003063
ENSG00000176531
Pleckstrin homology like domain family B member 3
Tissue enhanced
Detected in many
male glands:
38.3
PHLPP1
ENSSSCG00000004896
ENSG00000081913
PH domain and leucine rich repeat protein phosphatase 1
Tissue enhanced
Detected in all
brain:
46.9
PHLPP2
ENSSSCG00000002739
ENSG00000040199
PH domain and leucine rich repeat protein phosphatase 2
Low tissue specificity
Detected in all
PHOSPHO2
ENSSSCG00000015936
ENSG00000144362
Pyridoxal phosphate phosphatase PHOSPHO2
Low tissue specificity
Detected in all
PHPT1
ENSSSCG00000032970
ENSG00000054148
14 kDa phosphohistidine phosphatase
Low tissue specificity
Detected in all
PHRF1
ENSSSCG00000029723
ENSG00000070047
PHD and ring finger domains 1
Low tissue specificity
Detected in all
PHTF1
ENSSSCG00000006766
ENSG00000116793
Putative homeodomain transcription factor 1
Low tissue specificity
Detected in all
PHTF2
ENSSSCG00000015410
ENSG00000006576
Putative homeodomain transcription factor 2
Tissue enhanced
Detected in all
cartilage:
54.5
skeletal muscle:
47.2
PHYH
ENSSSCG00000039244
ENSG00000107537
Phytanoyl-CoA dioxygenase, peroxisomal
Tissue enhanced
Detected in all
liver:
56.3
PHYHD1
ENSSSCG00000005665
ENSG00000175287
Phytanoyl-CoA dioxygenase domain containing 1
Tissue enhanced
Detected in many
bone marrow:
16.0
kidney:
19.2
liver:
19.9
PHYHIP
ENSSSCG00000009621
ENSG00000168490
Phytanoyl-CoA 2-hydroxylase interacting protein
Tissue enriched
Detected in many
brain:
63.3
PHYHIPL
ENSSSCG00000039215
ENSG00000165443
Phytanoyl-CoA hydroxylase-interacting protein-like
Group enriched
Detected in many
brain:
51.1
pineal gland:
23.5
PHYKPL
ENSSSCG00000014030
ENSG00000175309
5-phosphohydroxy-L-lysine phospho-lyase
Low tissue specificity
Detected in all
PI4K2A
ENSSSCG00000010525
ENSG00000155252
Phosphatidylinositol 4-kinase type 2 alpha
Low tissue specificity
Detected in all
PI4KA
ENSSSCG00000010092
ENSG00000241973
Phosphatidylinositol 4-kinase alpha
Low tissue specificity
Detected in all
PI4KB
ENSSSCG00000006626
ENSG00000143393
Phosphatidylinositol 4-kinase beta
Low tissue specificity
Detected in all
PIAS1
ENSSSCG00000004958
ENSG00000033800
Protein inhibitor of activated STAT 1
Low tissue specificity
Detected in all
PIAS2
ENSSSCG00000034730
ENSG00000078043
Protein inhibitor of activated STAT 2
Low tissue specificity
Detected in all
PIAS3
ENSSSCG00000006689
ENSG00000131788
Protein inhibitor of activated STAT 3
Low tissue specificity
Detected in all
PIAS4
ENSSSCG00000022066
ENSG00000105229
Protein inhibitor of activated STAT 4
Low tissue specificity
Detected in all
PIBF1
ENSSSCG00000024722
ENSG00000083535
Progesterone immunomodulatory binding factor 1
Low tissue specificity
Detected in all
PICALM
ENSSSCG00000014913
ENSG00000073921
Phosphatidylinositol-binding clathrin assembly protein
Low tissue specificity
Detected in all
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