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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PDLIM4
ENSSSCG00000014274
ENSG00000131435
PDZ and LIM domain protein 4
Low tissue specificity
Detected in all
PDLIM5
ENSSSCG00000009192
ENSG00000163110
PDZ and LIM domain 5
Tissue enhanced
Detected in all
heart:
132.1
skeletal muscle:
126.5
PDLIM7
ENSSSCG00000040507
ENSG00000196923
PDZ and LIM domain 7
Tissue enhanced
Detected in all
skeletal muscle:
228.4
smooth muscle:
135.2
PDP1
ENSSSCG00000006107
ENSG00000164951
Pyruvate dehyrogenase phosphatase catalytic subunit 1
Tissue enhanced
Detected in all
brain:
54.0
PDP2
ENSSSCG00000036067
ENSG00000172840
Pyruvate dehyrogenase phosphatase catalytic subunit 2
Low tissue specificity
Detected in all
PDPK1
ENSSSCG00000037719
ENSG00000140992
3-phosphoinositide dependent protein kinase 1
Low tissue specificity
Detected in all
PDPR
ENSSSCG00000002724
ENSG00000090857
Pyruvate dehydrogenase phosphatase regulatory subunit
Low tissue specificity
Detected in all
PDRG1
ENSSSCG00000007237
ENSG00000088356
P53 and DNA damage regulated 1
Low tissue specificity
Detected in all
PDS5A
ENSSSCG00000023112
ENSG00000121892
PDS5 cohesin associated factor A
Low tissue specificity
Detected in all
PDS5B
ENSSSCG00000009345
ENSG00000083642
PDS5 cohesin associated factor B
Low tissue specificity
Detected in all
PDSS1
ENSSSCG00000011061
ENSG00000148459
Decaprenyl diphosphate synthase subunit 1
Tissue enhanced
Detected in all
large intestine:
32.3
PDSS2
ENSSSCG00000036168
ENSG00000164494
Decaprenyl-diphosphate synthase subunit 2
Low tissue specificity
Detected in all
PDXDC1
ENSSSCG00000039119
ENSG00000179889
Pyridoxal dependent decarboxylase domain containing 1
Tissue enhanced
Detected in all
male glands:
101.4
PDXK
ENSSSCG00000034758
ENSG00000160209
Pyridoxal kinase
Tissue enhanced
Detected in all
brain:
25.4
PDXP
ENSSSCG00000034632
ENSG00000241360
Pyridoxal phosphatase
Tissue enhanced
Detected in many
brain:
33.1
PDZD11
ENSSSCG00000012378
ENSG00000120509
PDZ domain-containing protein 11
Low tissue specificity
Detected in all
PDZD2
ENSSSCG00000016810
ENSG00000133401
PDZ domain containing 2
Low tissue specificity
Detected in all
PDZD3
ENSSSCG00000027710
ENSG00000172367
PDZ domain containing 3
Tissue enhanced
Detected in all
kidney:
41.1
PDZD9
ENSSSCG00000026686
ENSG00000155714
PDZ domain containing 9
Tissue enriched
Detected in all
testis:
91.7
PDZK1
ENSSSCG00000006693
ENSG00000174827
PDZ domain containing 1
Tissue enhanced
Detected in many
epididymis:
69.2
kidney:
109.6
small intestine:
49.1
PDZRN3
ENSSSCG00000011521
ENSG00000121440
PDZ domain containing ring finger 3
Low tissue specificity
Detected in many
PDZRN4
ENSSSCG00000000791
ENSG00000165966
PDZ domain containing ring finger 4
Tissue enhanced
Detected in many
choroid plexus:
19.5
skin:
31.0
smooth muscle:
23.3
PEA15
ENSSSCG00000032164
ENSG00000162734
Proliferation and apoptosis adaptor protein 15
Tissue enriched
Detected in all
lens:
683.5
PEAK1
ENSSSCG00000001869
ENSG00000173517
Pseudopodium-enriched atypical kinase 1
Low tissue specificity
Detected in all
PEAR1
ENSSSCG00000006463
ENSG00000187800
Platelet endothelial aggregation receptor 1
Low tissue specificity
Detected in all
PECAM1
ENSSSCG00000017277
ENSG00000261371
Platelet endothelial cell adhesion molecule precursor
Tissue enhanced
Detected in many
cartilage:
100.2
PECR
ENSSSCG00000022758
ENSG00000115425
Peroxisomal trans-2-enoyl-CoA reductase
Tissue enhanced
Detected in all
kidney:
66.4
PEF1
ENSSSCG00000034810
ENSG00000162517
Penta-EF-hand domain containing 1
Low tissue specificity
Detected in all
PELI1
ENSSSCG00000028947
ENSG00000197329
Pellino E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
PELI2
ENSSSCG00000033800
ENSG00000139946
Pellino E3 ubiquitin protein ligase family member 2
Low tissue specificity
Detected in all
PELI3
ENSSSCG00000012944
ENSG00000174516
Pellino E3 ubiquitin protein ligase family member 3
Tissue enriched
Detected in all
lens:
45.5
PELO
ENSSSCG00000016884
ENSG00000152684
Pelota mRNA surveillance and ribosome rescue factor
Low tissue specificity
Detected in all
PELP1
ENSSSCG00000017924
ENSG00000141456
Proline, glutamate and leucine rich protein 1
Low tissue specificity
Detected in all
PEMT
ENSSSCG00000018055
ENSG00000133027
Phosphatidylethanolamine N-methyltransferase
Tissue enriched
Detected in all
epididymis:
180.8
PEPD
ENSSSCG00000002868
ENSG00000124299
Peptidase D
Tissue enhanced
Detected in all
kidney:
60.2
PER1
ENSSSCG00000017983
ENSG00000179094
Period circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
119.9
PER2
ENSSSCG00000016338
ENSG00000132326
Period circadian regulator 2
Low tissue specificity
Detected in all
PER3
ENSSSCG00000028572
ENSG00000049246
Period circadian regulator 3
Low tissue specificity
Detected in all
PERP
ENSSSCG00000038420
ENSG00000112378
P53 apoptosis effector related to PMP-22
Tissue enhanced
Detected in many
cornea:
115.4
mouth:
93.3
skin:
53.2
PES1
ENSSSCG00000010010
ENSG00000100029
Pescadillo homolog
Low tissue specificity
Detected in all
PET100
ENSSSCG00000034876
ENSG00000229833
Protein PET100 homolog, mitochondrial
Tissue enhanced
Detected in all
male glands:
47.1
PEX1
ENSSSCG00000029967
ENSG00000127980
Peroxisomal biogenesis factor 1
Low tissue specificity
Detected in all
PEX10
ENSSSCG00000027916
ENSG00000157911
Peroxisomal biogenesis factor 10
Low tissue specificity
Detected in all
PEX11A
ENSSSCG00000027052
ENSG00000166821
Peroxisomal biogenesis factor 11 alpha
Low tissue specificity
Detected in all
PEX11G
ENSSSCG00000013569
ENSG00000104883
Peroxisomal biogenesis factor 11 gamma
Low tissue specificity
Detected in all
PEX12
ENSSSCG00000017713
ENSG00000108733
Peroxisomal biogenesis factor 12
Low tissue specificity
Detected in all
PEX13
ENSSSCG00000008387
ENSG00000162928
Peroxisomal biogenesis factor 13
Low tissue specificity
Detected in all
PEX14
ENSSSCG00000003405
ENSG00000142655
Peroxisomal biogenesis factor 14
Low tissue specificity
Detected in all
PEX16
ENSSSCG00000013267
ENSG00000121680
Peroxisomal biogenesis factor 16
Low tissue specificity
Detected in all
PEX2
ENSSSCG00000006168
ENSG00000164751
Peroxisome biogenesis factor 2
Low tissue specificity
Detected in all
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