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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NGRN
ENSSSCG00000031810
ENSG00000182768
Neugrin, neurite outgrowth associated
Tissue enhanced
Detected in all
testis:
32.5
NHEJ1
ENSSSCG00000016205
ENSG00000187736
Non-homologous end joining factor 1
Low tissue specificity
Detected in all
NHLRC2
ENSSSCG00000010645
ENSG00000196865
NHL repeat-containing protein 2
Low tissue specificity
Detected in all
NHLRC3
ENSSSCG00000037746
ENSG00000188811
NHL repeat containing 3
Low tissue specificity
Detected in all
NHS
ENSSSCG00000012151
ENSG00000188158
NHS actin remodeling regulator
Tissue enhanced
Detected in all
lens:
30.7
NHSL1
ENSSSCG00000004149
ENSG00000135540
NHS like 1
Tissue enhanced
Detected in all
lens:
77.5
NHSL2
ENSSSCG00000012408
ENSG00000204131
NHS like 2
Low tissue specificity
Detected in many
NID1
ENSSSCG00000026819
ENSG00000116962
Nidogen 1
Tissue enhanced
Detected in many
lens:
103.6
NID2
ENSSSCG00000005030
ENSG00000087303
Nidogen 2
Tissue enhanced
Detected in many
lens:
131.6
NIF3L1
ENSSSCG00000039654
ENSG00000196290
NGG1 interacting factor 3 like 1
Low tissue specificity
Detected in all
NIFK
ENSSSCG00000015730
ENSG00000155438
MKI67 FHA domain-interacting nucleolar phosphoprotein
Low tissue specificity
Detected in all
NIM1K
ENSSSCG00000016873
ENSG00000177453
NIM1 serine/threonine protein kinase
Low tissue specificity
Detected in many
NIN
ENSSSCG00000005022
ENSG00000100503
Ninein
Low tissue specificity
Detected in all
NINJ1
ENSSSCG00000040061
ENSG00000131669
Ninjurin 1
Low tissue specificity
Detected in all
NIP7
ENSSSCG00000033741
ENSG00000132603
60S ribosome subunit biogenesis protein NIP7 homolog
Tissue enhanced
Detected in all
lens:
31.6
NIPA2
ENSSSCG00000036898
ENSG00000140157
Non imprinted in Prader-Willi/Angelman syndrome 2
Low tissue specificity
Detected in all
NIPAL1
ENSSSCG00000037950
ENSG00000163293
NIPA like domain containing 1
Tissue enhanced
Detected in many
male glands:
42.3
NIPAL2
ENSSSCG00000031267
ENSG00000104361
NIPA like domain containing 2
Low tissue specificity
Detected in all
NIPAL3
ENSSSCG00000003543
ENSG00000001461
NIPA like domain containing 3
Low tissue specificity
Detected in all
NIPBL
ENSSSCG00000016842
ENSG00000164190
NIPBL, cohesin loading factor
Low tissue specificity
Detected in all
NIPSNAP2
ENSSSCG00000036659
ENSG00000146729
Nipsnap homolog 2
Tissue enhanced
Detected in all
skeletal muscle:
93.6
NIPSNAP3B
ENSSSCG00000005424
ENSG00000165028
Nipsnap homolog 3B
Low tissue specificity
Detected in all
NISCH
ENSSSCG00000011442
ENSG00000010322
Nischarin
Low tissue specificity
Detected in all
NIT1
ENSSSCG00000037793
ENSG00000158793
Nitrilase 1
Tissue enhanced
Detected in all
kidney:
51.0
NIT2
ENSSSCG00000011968
ENSG00000114021
Omega-amidase NIT2
Tissue enhanced
Detected in all
male glands:
81.4
NKAIN1
ENSSSCG00000032193
ENSG00000084628
Sodium/potassium transporting ATPase interacting 1
Tissue enhanced
Detected in many
adrenal gland:
21.9
brain:
18.4
ovary:
31.1
NKAIN3
ENSSSCG00000034894
ENSG00000185942
Sodium/potassium transporting ATPase interacting 3
Tissue enhanced
Detected in all
brain:
28.0
NKAP
ENSSSCG00000012613
ENSG00000101882
NF-kappa-B-activating protein
Low tissue specificity
Detected in all
NKAPD1
ENSSSCG00000015044
ENSG00000150776
NKAP domain containing 1
Low tissue specificity
Detected in all
NKD2
ENSSSCG00000037791
ENSG00000145506
Naked cuticle homolog 2
Tissue enhanced
Detected in many
brain:
44.8
NKG7
ENSSSCG00000003231
ENSG00000105374
Protein NKG7
Tissue enhanced
Detected in many
bone marrow:
28.4
lung:
28.3
NKIRAS1
ENSSSCG00000024296
ENSG00000197885
NFKB inhibitor interacting Ras like 1
Tissue enhanced
Detected in all
brain:
37.2
lens:
30.9
NKIRAS2
ENSSSCG00000017418
ENSG00000168256
NFKB inhibitor interacting Ras like 2
Low tissue specificity
Detected in all
NKRF
ENSSSCG00000012620
ENSG00000186416
NFKB repressing factor
Low tissue specificity
Detected in all
NKTR
ENSSSCG00000011284
ENSG00000114857
Natural killer cell triggering receptor
Low tissue specificity
Detected in all
NLE1
ENSSSCG00000025796
ENSG00000073536
Notchless homolog 1
Tissue enhanced
Detected in all
testis:
33.3
NLGN3
ENSSSCG00000027465
ENSG00000196338
Neuroligin 3
Tissue enhanced
Detected in many
brain:
23.8
vagus nerve:
10.8
NLK
ENSSSCG00000017756
ENSG00000087095
Nemo like kinase
Low tissue specificity
Detected in all
NLN
ENSSSCG00000016778
ENSG00000123213
Neurolysin, mitochondrial
Tissue enhanced
Detected in all
liver:
36.2
NLRC3
ENSSSCG00000007956
ENSG00000167984
NLR family CARD domain containing 3
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
21.9
NLRC5
ENSSSCG00000039751
ENSG00000140853
Protein NLRC5
Tissue enhanced
Detected in many
lymphoid tissue:
34.2
stomach:
48.2
NLRP12
ENSSSCG00000003251
ENSG00000142405
NLR family pyrin domain containing 12
Low tissue specificity
Detected in all
NLRP3
ENSSSCG00000013940
ENSG00000162711
NACHT, LRR and PYD domains-containing protein 3
Low tissue specificity
Detected in all
NLRX1
ENSSSCG00000015113
ENSG00000160703
NLR family member X1
Tissue enhanced
Detected in all
retina:
64.9
NMB
ENSSSCG00000036907
ENSG00000197696
Neuromedin-B precursor
Group enriched
Detected in many
brain:
36.5
endometrium:
35.2
NMBR
ENSSSCG00000036250
ENSG00000135577
Neuromedin-B receptor
Low tissue specificity
Detected in all
NMD3
ENSSSCG00000022952
ENSG00000169251
NMD3 ribosome export adaptor
Low tissue specificity
Detected in all
NME1
ENSSSCG00000038348
ENSG00000239672
Nucleoside diphosphate kinase A
Low tissue specificity
Detected in all
NME2
ENSSSCG00000017591
ENSG00000011052,ENSG00000243678
Nucleoside diphosphate kinase B
Tissue enhanced
Detected in all
male glands:
143.6
NME3
ENSSSCG00000008017
ENSG00000103024
Nucleoside diphosphate kinase 3 isoform 2 precursor
Low tissue specificity
Detected in all
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