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Gene name
Human disease related genes
Uniprot keyword
Chromosome
External id
Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Term
Gene name
Class
Cancers
Cardiovascular diseases
Congenital disorders of metabolism
Congenital malformations
Digestive system diseases
Endocrine and metabolic diseases
Immune system diseases
Musculoskeletal diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
Urinary system diseases
Subclass
Class
Biological process
Molecular function
Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040422
Tissue enhanced
Detected in all
brain:
28.1
na
ENSSSCG00000040426
ENSG00000237489
Low tissue specificity
Detected in all
na
ENSSSCG00000040427
Tissue enhanced
Detected in some
bone marrow:
2.1
fallopian tube:
1.8
skin:
1.8
na
ENSSSCG00000040429
Low tissue specificity
Detected in all
na
ENSSSCG00000040430
Tissue enhanced
Detected in many
testis:
14.5
na
ENSSSCG00000040433
Low tissue specificity
Detected in all
na
ENSSSCG00000040437
Low tissue specificity
Detected in all
na
ENSSSCG00000040438
ENSG00000131174
Low tissue specificity
Detected in all
na
ENSSSCG00000040441
ENSG00000184924
Low tissue specificity
Detected in all
na
ENSSSCG00000040448
Low tissue specificity
Detected in all
na
ENSSSCG00000040456
Low tissue specificity
Detected in many
na
ENSSSCG00000040469
Tissue enhanced
Detected in some
retina:
9.2
testis:
12.7
na
ENSSSCG00000040472
Tissue enhanced
Detected in many
cartilage:
9.9
synovial tissue:
14.1
na
ENSSSCG00000040473
ENSG00000204703
Low tissue specificity
Detected in all
na
ENSSSCG00000040487
Low tissue specificity
Detected in all
na
ENSSSCG00000040490
Tissue enhanced
Detected in many
testis:
23.9
na
ENSSSCG00000040491
Low tissue specificity
Detected in many
na
ENSSSCG00000040495
Low tissue specificity
Detected in all
na
ENSSSCG00000040500
Tissue enhanced
Detected in some
testis:
7.2
na
ENSSSCG00000040501
Tissue enhanced
Detected in some
brain:
4.2
retina:
9.4
testis:
3.6
na
ENSSSCG00000040515
Tissue enhanced
Detected in many
brain:
17.8
ductus deferens:
29.2
male glands:
47.1
vagus nerve:
19.8
na
ENSSSCG00000040516
Tissue enhanced
Detected in some
bone marrow:
2.8
na
ENSSSCG00000040521
Low tissue specificity
Detected in all
na
ENSSSCG00000040525
Low tissue specificity
Detected in all
na
ENSSSCG00000040528
ENSG00000113312
Low tissue specificity
Detected in all
na
ENSSSCG00000040531
ENSG00000049247
Urotensin-2 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000040535
ENSG00000160932
Tissue enhanced
Detected in many
lymphoid tissue:
57.0
na
ENSSSCG00000040538
ENSG00000139668
Low tissue specificity
Detected in all
na
ENSSSCG00000040540
Low tissue specificity
Detected in all
na
ENSSSCG00000040548
Tissue enhanced
Detected in all
lymphoid tissue:
23.5
na
ENSSSCG00000040549
Tissue enhanced
Detected in many
male glands:
28.7
na
ENSSSCG00000040554
ENSG00000092758
Tissue enriched
Detected in some
cartilage:
366.1
na
ENSSSCG00000040556
Tissue enhanced
Detected in all
male glands:
25.4
na
ENSSSCG00000040558
Tissue enhanced
Detected in many
retina:
33.3
na
ENSSSCG00000040560
Low tissue specificity
Detected in all
na
ENSSSCG00000040566
ENSG00000139597
Low tissue specificity
Detected in all
na
ENSSSCG00000040576
Tissue enhanced
Detected in many
brain:
25.6
na
ENSSSCG00000040577
ENSG00000221821
Low tissue specificity
Detected in all
na
ENSSSCG00000040580
Low tissue specificity
Detected in all
na
ENSSSCG00000040584
Low tissue specificity
Detected in many
na
ENSSSCG00000040585
Low tissue specificity
Detected in all
na
ENSSSCG00000040587
Low tissue specificity
Detected in all
na
ENSSSCG00000040588
Low tissue specificity
Detected in many
na
ENSSSCG00000040589
Tissue enhanced
Detected in some
brain:
4.2
retina:
6.7
testis:
4.9
na
ENSSSCG00000040619
Low tissue specificity
Detected in many
na
ENSSSCG00000040623
Low tissue specificity
Detected in all
na
ENSSSCG00000040632
Low tissue specificity
Detected in all
na
ENSSSCG00000040639
Low tissue specificity
Detected in all
na
ENSSSCG00000040654
Low tissue specificity
Detected in all
na
ENSSSCG00000040661
Tissue enhanced
Detected in many
esophagus:
25.4
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