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Gene name
Human disease related genes
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Within tissue variation
UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15100 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000008250
ENSG00000066032
Group enriched
Detected in many
brain:
27.9
lens:
85.1
pineal gland:
27.0
na
ENSSSCG00000008254
Group enriched
Detected in many
brain:
31.5
lens:
105.5
pineal gland:
34.4
na
ENSSSCG00000008284
Tissue enriched
Detected in many
liver:
55.6
na
ENSSSCG00000008287
ENSG00000115274
Low tissue specificity
Detected in all
na
ENSSSCG00000008309
ENSG00000116096
Low tissue specificity
Detected in all
na
ENSSSCG00000008317
ENSG00000144043,ENSG00000258881
Low tissue specificity
Detected in all
na
ENSSSCG00000008352
ENSG00000115946
Low tissue specificity
Detected in all
na
ENSSSCG00000008375
Tissue enhanced
Detected in many
choroid plexus:
4.2
na
ENSSSCG00000008383
Low tissue specificity
Detected in all
na
ENSSSCG00000008385
Low tissue specificity
Detected in all
na
ENSSSCG00000008415
ENSG00000115239,ENSG00000270898
Ankyrin repeat and SOCS box protein 3
Low tissue specificity
Detected in all
na
ENSSSCG00000008421
ENSG00000138039
Sus scrofa lutropin-choriogonadotropic hormone receptor-like (LOC100623180), mRNA.
Group enriched
Detected in many
ovary:
28.1
testis:
49.6
na
ENSSSCG00000008422
ENSG00000243244
Tissue enhanced
Detected in all
cervix:
81.1
na
ENSSSCG00000008425
Low tissue specificity
Detected in all
na
ENSSSCG00000008433
Tissue enhanced
Detected in all
brain:
178.2
male glands:
222.0
na
ENSSSCG00000008440
ENSG00000151665
Low tissue specificity
Detected in all
na
ENSSSCG00000008474
Low tissue specificity
Detected in all
na
ENSSSCG00000008484
ENSG00000115875
Low tissue specificity
Detected in all
na
ENSSSCG00000008485
ENSG00000004455
Low tissue specificity
Detected in all
na
ENSSSCG00000008488
ENSG00000115841
Tissue enhanced
Detected in all
liver:
55.0
na
ENSSSCG00000008506
Low tissue specificity
Detected in all
na
ENSSSCG00000008514
Tissue enhanced
Detected in many
retina:
8.9
na
ENSSSCG00000008531
Low tissue specificity
Detected in all
na
ENSSSCG00000008576
ENSG00000138101
Tissue enhanced
Detected in all
male glands:
91.3
na
ENSSSCG00000008582
ENSG00000186453
Tissue enhanced
Detected in all
testis:
31.0
na
ENSSSCG00000008584
ENSG00000219626
Tissue enhanced
Detected in all
brain:
37.7
na
ENSSSCG00000008599
Tissue enhanced
Detected in all
ductus deferens:
36.1
na
ENSSSCG00000008722
ENSG00000125089
Low tissue specificity
Detected in all
na
ENSSSCG00000008812
Low tissue specificity
Detected in all
na
ENSSSCG00000008845
Tissue enhanced
Detected in all
ovary:
57.1
na
ENSSSCG00000008848
Low tissue specificity
Detected in many
na
ENSSSCG00000008852
ENSG00000164114
Low tissue specificity
Detected in many
na
ENSSSCG00000008855
Tissue enhanced
Detected in many
brain:
12.6
pineal gland:
13.3
retina:
27.3
na
ENSSSCG00000008892
Tissue enhanced
Detected in all
epididymis:
49.9
na
ENSSSCG00000008898
ENSG00000171476
Homeodomain-only protein
Tissue enhanced
Detected in many
cornea:
62.1
lens:
122.1
na
ENSSSCG00000008954
Tissue enhanced
Detected in many
cartilage:
86.3
liver:
86.3
na
ENSSSCG00000008965
ENSG00000174808
Tissue enhanced
Detected in all
smooth muscle:
51.0
na
ENSSSCG00000008968
Low tissue specificity
Detected in all
na
ENSSSCG00000008974
ENSG00000198301
Low tissue specificity
Detected in all
na
ENSSSCG00000008979
ENSG00000138750
Low tissue specificity
Detected in all
na
ENSSSCG00000008981
ENSG00000189157
Low tissue specificity
Detected in all
na
ENSSSCG00000009052
ENSG00000109445
Low tissue specificity
Detected in all
na
ENSSSCG00000009060
ENSG00000196782
Tissue enhanced
Detected in all
male glands:
35.4
na
ENSSSCG00000009069
ENSG00000151470
Low tissue specificity
Detected in all
na
ENSSSCG00000009116
Tissue enhanced
Detected in some
brain:
6.4
male glands:
7.5
thyroid gland:
13.6
na
ENSSSCG00000009126
Low tissue specificity
Detected in all
na
ENSSSCG00000009128
ENSG00000138660
Low tissue specificity
Detected in all
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000009146
Low tissue specificity
Detected in all
na
ENSSSCG00000009162
ENSG00000164037
Tissue enriched
Detected in many
testis:
42.6
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